RnoINT0061045 @ rn6
Intron Retention
Gene
ENSRNOG00000054625 | Fhod1
Description
formin homology 2 domain containing 1 [Source:RGD Symbol;Acc:1589776]
Coordinates
chr19:37285314-37285749:-
Coord C1 exon
chr19:37285587-37285749
Coord A exon
chr19:37285515-37285586
Coord C2 exon
chr19:37285314-37285514
Length
72 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
AATTTCTCTGTCTCCCCTAGGTA
3' ss Score
11.84
Exon sequences
Seq C1 exon
ACAGAGAAGTTCTCGGGTGTGGCTGGGGAGGTCCCCAGTAACCTGTCTGTCCCAGTGGCTGTGGGCAGCGGGCCAGGTCGGGGTGATGCTGACAATCATGCCAGTATGAAGAGTTTGCTTACCAGCAGGCCAGAAGACGCCACACACAGCCGACGTAGCAGAG
Seq A exon
GTAGGGCTCATAGCTGCTGCTAGGGGAATGTGTTCTAAAGCCACTTTTGCCTAATTTCTCTGTCTCCCCTAG
Seq C2 exon
GTATGGTCCAGAGTAGTTCCCCCGTCACACACACAACAGTAGGGCCCTTCACTGCATCCCCTGAGGAGACTGCAGCCTCTGGTTTACCTAGTGACACATCAGATGAGATAATGGACCTGCTGGTGCAGTCAGTCACCAAGAGCAGTCCTAGAGCCTTGGCTGCTCGGGAGAGGAAGCGCTCTCGTGGCAACCGGAAGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054625:ENSRNOT00000084734:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.836 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTAACCTGTCTGTCCCA
R:
AGTGAAGGGCCCTACTGTTGT
Band lengths:
183-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]