BtaINT0062514 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34977626-34978063:-
Coord C1 exon
chr18:34977901-34978063
Coord A exon
chr18:34977827-34977900
Coord C2 exon
chr18:34977626-34977826
Length
74 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
3' ss Seq
TTTTTACCTGGCTCCCACAGGCA
3' ss Score
9.49
Exon sequences
Seq C1 exon
ACAGAGAAGTTCTCAGGTGTGGCTGGGGAAACCCCCAGCAAGCCATCTGTCCCTGTGGCTGTGAGCAGTGGGCCAGGAGAAGGTGATGCTGATAGTCACGCCACCATGAAGAGTCTGCTGGCCAGCAAGCCTGAGGATGCCACACATGGCCGTCGCAGCAGAG
Seq A exon
GTGGGACCAGTGGCTGCTGGGGGCAGTGGGCTCTGGGGCCACTCTAGCCTGACCTTTTTACCTGGCTCCCACAG
Seq C2 exon
GCATGGTCCAGAGCAGCTCCCCAGTCATGCCTACAGCAGTGGGGCCCTCCACTGTACCCCCGGAAGAACCTCCAGGCTCCAGTTTACCCAGTGACACTTCAGATGAGATCATGGACCTGCTGGTGCAGTCAGTGACCAAGAGCAGCCCCCGTGCCTTAGCTGCTAGGGAACGCAAGCGTTCCCGTGGCAACCGCAAGTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427:ENSBTAT00000063472:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATGCTGATAGTCACGCC
R:
AAACTGGAGCCTGGAGGTTCT
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development