GgaINT0025821 @ galGal4
Intron Retention
Gene
ENSGALG00000002690 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr11:1788900-1789999:-
Coord C1 exon
chr11:1789866-1789999
Coord A exon
chr11:1788982-1789865
Coord C2 exon
chr11:1788900-1788981
Length
884 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
GACTTTGGTGATTGTCGTAGGGT
3' ss Score
5.42
Exon sequences
Seq C1 exon
ATTGGCTGCAGGTACCACGCGCTTCTGTGCAGGCATCGTGAGCACAGCCCGGCCCGTGTCCATCGAGCTGAAGATGGCAGACTACTCCAACAAGCTGTACCAGCAGCTGGAGCAAGAGACGGGAGTGCAAACAG
Seq A exon
GTACCAAAAGTGTAAGCATTGAGTGACTGAGTAAGCTTTGGGAGGTTGGATCAGTGAAGTGATGCTCCCATGTCTTAATTGGTGGTGGTTCCTGTTCAAAGAATGAGATGGATGCAAAAAAGTGCAATCAGAAGAATGAGAGGAAGGTGTCAGATGGGCAGGCTGAAGGCAGGCTGCCTGCTGAGTGCAGGCGTTCTTCCTCTCGTCTGTAACCTGGACAAACACAGGTGAATTTTCCCAAGGACACTAAAGAGATCAGAGCAAACGAGCCATGTTCTGCAGCAGTTCACTTGTCAGAAAGGCAGAAAGGTTAACGAGTTCCAAAGTGCAGGCAAAGCAAGGTGTTTTACTCCAGTTTCACCCTGGAAACATGCTGAAATTCTGCCTCTCCTTCCCAAATGCTGGGGCACATATCTGGTGTGAAGAACTGAAAGCACTCTGCTGACAAGGACCTGTGATACATGTCATGCTCGACACGTGTCCATAGCCATGTCTGTGATTAAGGTTGGTATTAAGCTGCTGCAGGTGGTAGAATCACCAAACATCTGCTTCTGCTTGGTGAGGTTTTGTTGCTCTGCGTAGCTAGCAGATGACGTGCTCACATTTTTGGCAGTAACCTCTCTTCTCTTTTAATAGGTTCCGCGTGTGGAGTTTAACTGTTCTGTAAGCATGAGTAAATGCAGAACGAAGGAGAATTAGAGTACAGCTCAGAACTAAAGCACTTTTTGTCCTTTGTTTGCTATTTGTGGTGGCTAGCTGGGGAGTGTTTCAGGTTACGTAGGGCCCGGGACCTCCTGGCTCTCAAGTAGTGGAAGCAGCGAGTCTGAAATGAAAAGGAATTTGAGATCCTGCCAAATCTGACTTGACTTTGGTGATTGTCGTAG
Seq C2 exon
GGTACGTGAAGACAGGCTCTGTTTCTCTGGCTCAGACTCAGGATCGGCTGATCTCTCTGAAACGCATTGCTTCATCTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002690:ENSGALT00000004241:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(12.5=100),PF071777=Neuralized=PD(58.8=65.2)
A:
NA
C2:
PF0126619=DAO=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGCTGCAGGTACCACG
R:
TGAGAGATGAAGCAATGCGTT
Band lengths:
215-1099
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]