HsaINT1026586 @ hg38
Intron Retention
Gene
ENSG00000090857 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr16:70127260-70128865:+
Coord C1 exon
chr16:70127260-70127393
Coord A exon
chr16:70127394-70128783
Coord C2 exon
chr16:70128784-70128865
Length
1390 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TGGGCTCATTTTTCTTACAGGTT
3' ss Score
10.19
Exon sequences
Seq C1 exon
GCTGGCTGCTGGCTCTACCAGGTTCTGTGCTGGCATCCTGAGCACTGCCAGGCACTTGACCATTGAGCAGAAGATGGCAGACTACTCAAACAAACTCTACTATCAGTTAGAGCAAGAAACAGGGATCCAAACAG
Seq A exon
GTAAGCAAGTGTCTTCCATTTATTGCTTTGCCTGTCCCTGAGATTGTTATATTCATTTCTGTATTTGGTCCTCTGCCAGGTGTGCCTGCTGCTTTGGTAATTAAAACTTGGGTTGGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAGAAATTAAGAAAATATGTAAATTATCCTTACTGTACTTCTTTTGAAAATAAGATACCAAATTGCTTCAACTCTTTCTTCATAAGAATTAAGAGTCATTGCATTTTAGGAGAATTGTCATTGGCCCAAGTGTAATTATGGTTCTATATCAGGTGTGTTGATTACAGACAACAGGAATTGGCTCTGGCCAACTTGGAGCTTGTTGGGAGGAGCTTGGGCCTGTGGAGTTGGCAGGAGGCTGCCAGCTGGAGGCAGCCTGGAAGCCAGGATGTGGGGACTGCACCGCAGGCAGTCCCTCAGCGAGAACAGGAGCAGCCTGGCGTGGCTGATGCTGCCCTTGAGATGGTGACCTCTAGTCATTCACCTACGTGCTCAAGACTGACTCTTCCAGGAGGGTCTGATTGGATAAGCTTAGGTCACATGCCCACTGTTTGGCTATACTGGGGAAGAAGAAGGGAGAATCCGACCCTTGGTAGCTGATGTTATTGTGAGTGGCCTTTGCCAGGGATTACACTCCCCCAAGACTAGGAGGAGAAAGGGTGAAACTGCCTAAAAGGTGGGAAGAATAGGGATGGTCGAATCCCTGCCCAAAACTGTCTTTTTTTTTTTTCTTTTTTTTAAAGACAAAGTCTCACTCTGTTACCCAGGCTAGAGTGCAGTGGTGCAATTTTGACCCACTGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTTCCCGGTAGCTGGGATTACAGGCGTGCACCACCACACCTGGCTAATTTTTATATTTTTAGTAGAGACAGGGTTTCACCATGCTGGCCAGGCTGGTCTCAAACTACTGACCTCAGATGATCCGCCCCCCTCAGCCTCCCAAAGTGCTGCGATTACAAGCATGAGCCACTACACCTGGCCTAGAATCTCATTTGATCCTCACAACCTCACAAAACTGTGAGCTGAGAATGTTTGGTCAGGGCATGGAGCCTTAGTGCATCTGAAGTTCTTAAAATTTTGCATAGAAGCTCAGAGAAGCTGATTTACCTGCCCAAGGATATTGAGTGGCAGTCCCAGGATTCATCACAGGTCTTCTAACCTATAATCTAGTGGATTTTCCACTCTCCTGTCCTACATTTGGTCTGATCTGTCTCATTTGGGCTCATTTTTCTTACAG
Seq C2 exon
GTTACACAAGGACAGGCTCAATCTTTCTGGCCCAAACTCAGGACCGACTGATCTCCCTGAAGCGCATCAACGCAGGGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090857:ENST00000288050:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(12.5=100)
A:
NA
C2:
PF0126619=DAO=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCTGCTGGCTCTAC
R:
TTCAGCCCTGCGTTGATGC
Band lengths:
216-1606
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains