GgaINT0027937 @ galGal4
Intron Retention
Gene
ENSGALG00000004960 | FBN1
Description
fibrillin 1 [Source:HGNC Symbol;Acc:HGNC:3603]
Coordinates
chr10:9683334-9684324:-
Coord C1 exon
chr10:9684199-9684324
Coord A exon
chr10:9683541-9684198
Coord C2 exon
chr10:9683334-9683540
Length
658 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
ATGCATAATTTGTCTTCCAGACA
3' ss Score
6.77
Exon sequences
Seq C1 exon
ATGAGAATGAATGTCAGACCAAGCCTGGGCTCTGTGAGAATGGTCGGTGTGTAAACACAGTGGGAAGTTACAGATGTGAATGCAATGAGGGATTCACAGTCAGTGACACTCAGAACGAATGCCTTG
Seq A exon
GTAAGTCCAACAGTAACACCCTAATGAATAATCACTTTGGTAACAGGAATTCTGTTTTCTGGGAGTCACGCTAGCTGGGTTTTTTTGGCAGTCAGATGTGACTTTTGCTTGAGGCTGCTTTACAGCTTAGTAAGCTGTCTCATTTTGCAGAAGTACTCAGAAGCTTAAACTTAGAAATATAACAGTGAATAAACACGGTCTTGAATTTACATTCCTGCAAGAAAGGGGCCTTTTTAAGTAGGTGTCCTCCTGCAATTTCACTCTTCCTGTGCTAAATGTATGCCTGCTTTGATCAGTCACGTTGGGTTGGCTAGCTGTGCAAGCTGACAGTGGGGTGGTATCAGTCAGCCTGGAATTGCTCTGCCTTTTCTCTGGGTCTAATTTTCAGCCAATCTTTCTCATCTGGAATCAAACAGAAATGTATCTTTTTATAAGCATAATGTAACTTGTCTTCCACCTTTTGCTAAATTTCCTGTCTTTGTTTCCCTTAGACGTCGTGCTCTCTTTCTTACTGCTGGTAGTCTTTCACTCTCAGTTGCACAGTCCCAGGGTGAAGTATGCCCTTTCTTTTATATTTCTGACTAAATTCCTAATATCTCATGACCTTCTGTAGGTCATTGCCATTAGGATTCTCTGTAATGCATAATTTGTCTTCCAG
Seq C2 exon
ACAACAGGGAAGGCTACTGCTTCACTGAAGTCTTACAAAGTATGTGTCAAATTGGATCAAGCAACAGGAACTCTGTCACCAAGTCTGAATGCTGCTGTGATGGTGGCCGAGGCTGGGGGCCGAACTGCGAGGTCTGCCCCTTCCCAGGCACTGTGGCCTTTAAGAAGCTTTGTCCTCATGGTCGGGGGTACATGTCCAATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960:ENSGALT00000007955:55
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
NA
C2:
PF0068312=TB=WD(100=62.9),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATGAATGTCAGACCAAGCCT
R:
GCTCCATTGGACATGTACCCC
Band lengths:
328-986
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]