RnoINT0059590 @ rn6
Intron Retention
Gene
ENSRNOG00000007302 | Fbn1
Description
fibrillin 1 [Source:RGD Symbol;Acc:620908]
Coordinates
chr3:117583266-117584157:-
Coord C1 exon
chr3:117584032-117584157
Coord A exon
chr3:117583473-117584031
Coord C2 exon
chr3:117583266-117583472
Length
559 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CCTCGGAATGTCTCTTCCAGACA
3' ss Score
7.28
Exon sequences
Seq C1 exon
ATGAGAATGAATGTCAGACCAAGCCTGGGATCTGTGAGAACGGGCGTTGCCTCAACACCCTGGGGAGCTACACCTGTGAGTGTAATGATGGCTTCACAGCCAGCCCCACTCAGGATGAGTGCTTGG
Seq A exon
GTAAGTATCTGAAGCTGCTGCAACCTTCCCTCTCACTCCAAAGCATTGTTTCTGGTTTGAAATAAAAGAAAATGTCAAAAATTGCAAAGGAGCTGAAAACATTCACCCTTGGGAGATGACTTAGTGACCGGAGTACTTTGGGATCAGGACCTCCCTACAGTGAAATTCTTCCTTTGCTAATTGCACACGGAATTGCTAGCTTGGGGCTTCCTTCTTGCTGCCCTTTAAGGCCTTTGTGACCAGGTCCACTTCCATATGTTTTTTTGCCCCCTTTTCTATAGCATGGCTGTTGCGACTGTCCTTCCACATGTCTGGAGCACAAAGAGTTATAAGCTTGTCTGCATCAATGCCTTTCTGCCAACTCACAGATTTCTTGTCTTGTTTCCGTCAGACGCCTCCTTTCTCTCTCCCTGCTGTTTCCAGCTTTCGCTTCTCGCTCCTCTTCACCCAGGGTAAAGTGTTACATCCTTTTGGTTTTTATATCTGACCAAATTCCTAATGGCCCTATGCATACAGAACAGCCCTTCAGTTCCTCTTTGCCTCGGAATGTCTCTTCCAG
Seq C2 exon
ACAACCGGGAAGGGTACTGCTTTTCTGAGGTACTGCAGAACATGTGCCAGATTGGATCAAGCAACAGAAACCCCGTCACCAAGTCCGAGTGCTGCTGTGATGGAGGGAGAGGCTGGGGACCCCACTGTGAGATCTGCCCCTTCGAGGGCACAGTGGCTTACAAGAAACTGTGTCCCCACGGCCGAGGATTCATGACCAACGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007302:ENSRNOT00000056022:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
NA
C2:
PF0068312=TB=WD(100=62.9),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAATGTCAGACCAAGCCTG
R:
TGCTCCGTTGGTCATGAATCC
Band lengths:
326-885
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]