GgaINT0028074 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:8647480-8648033:+
Coord C1 exon
chr10:8647480-8647497
Coord A exon
chr10:8647498-8647911
Coord C2 exon
chr10:8647912-8648033
Length
414 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGTT
5' ss Score
-0.57
3' ss Seq
TCTTGAAAATATCTTACTAGGAT
3' ss Score
5.59
Exon sequences
Seq C1 exon
AGATCTTTTAACATACAA
Seq A exon
GTAGTTTTTACACAGGAGTAAAAGATAAATGTCTGAGTTTGTGTTGAAGGAAGAAAGCACTATAGTTTTCTTAGAAAAACAATTACATACAATTTGAAACATCATTAGACTTTTGCACGAAAGCAGTTACCATTAGCAATTCACATAGTTCAGGTTGTATTTCATAAAATGTTCTTTCCTGGGTCTTACGGTTGTTTTTTGGAGATACAGCTATGAATAAATTAACGAGCACTGGTAAGAATCGCATACTTAAAATGTCAAAAATAAACTATTTTGGGGACATTGTAAATAACTTGATTTACAGATGTGTACTTCTAAGCATTCATATGTTTTTAAGAATAAACCCTTTAAAGCTTGAAATTAAAGAAATGTTAAACCTCAAATTTCTTTTCCTTCTTGAAAATATCTTACTAG
Seq C2 exon
GATTATATTATGGATTCTCCACCAGATGCACCAGATAATACATCTGGTATACTGTTTGGTGTGAGACAGAACTCGGGAGTTCCACAGTACCAGACTGAGCCAACAGTGAGTGTAACAGGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375:ENSGALT00000023225:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.171
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]