GgaINT0028087 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:8661981-8664824:+
Coord C1 exon
chr10:8661981-8662017
Coord A exon
chr10:8662018-8664726
Coord C2 exon
chr10:8664727-8664824
Length
2709 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
AGTAGACATTTTTGTTGCAGGGG
3' ss Score
4.7
Exon sequences
Seq C1 exon
TTTCTGTAGATTTACCAACTGCTGAACAAGTATCTGA
Seq A exon
GTAAGTTTTCTTTTGCCACTCAGTATTTCTTCTTTTCCTACTAATTCAGTGACAGATGGTCAAAAATTGTACTTTGAACTTGGATTTCTTCCAAATTCATTAGAACTGAAAATGTATGGAATGTACACTTAATGTGTTTTTACTCTTGACTATGTCCAGAATCCCAAGAAGGGGGAGATAAATGGCCTAGGTCATAAAACACAATTCTTGCAGTATTAAAATTTCTCGGTTCTAATTACAAAGTCTAGGCCTAGAGAGACTGTTATTTCAAGTCAGTTTTAATATTAGCAATATTAAATGAGTGTTGAATGTTCTTTACACAGTGTTGATATAAATACAAAAAGAAAATAAAAACTTTTACTTGACATAGGATACATTATTTAGAAATAATTTTCCAAGTAATGTCATTTATTTGACAAAATTGTATACTAATTAATGTCGAATTTTTTTTAAATGCAAAGAAAAATTTGAAAAGAAAAATAAGTATGGAAATCTTGGCTTTTGGTTTAAAGATTTGAAAAAGAACCTGCAAAACTGTAGAGGCCATTTTTATAGAATTTGTGTTTTTTTTAAATACTAGACTCAAATATGCTAAAACTTTCCCTGATTGTACTAGAACAGTATCTGAGACTTTACAATGTAGTTTATAAACCTACTTGTGCCTTAACTGAAGGTTCTGAGGTATGCCAGTTGAAACAAACATTTGAGTTCTCTCTGAAGCTCGTTTGAAAGTGGGAATAAAGATGTCAACTATACTGCAAAGAAGGAAGTTTTCAGAAGGTGGAAGAATATAGCTTAACCCAGATTTAACAGCAGAGTGTCATTGAATCCATATTACCTATAGCAGGATTCTAAAGGAGACTGGAGATTCTCAAGCATGATGAGGACTTCAGCAGAGAGAGCAGTCTTCACTGGGTGTTGGAACTATTCCCAATAGGTTATTTCTGATATAGTGAAAGATGTCATGTTCATGCCAAGTAGCTTGGAGTTAGATGACCTTAAGAGGTCTTTTCCAACCCCAAGTATTCTATGATTTCATTACTTTCTATTAATATTTCTTATTTATAATATTGTTATATACTTGTCTGTATAATTGTCTTGTAACTTTAAGTTTCGAATGCAGTGGCCAGTAAGAGGACATGCTGGAATCATCTCTCAACTGATCCAAACATGGAAATACATTTGTTTGATTATGAGTAATAATAGCATAAAAAGTATGCTGTGAACTTCAAACCTCTAGTAGTAACTGCTTAGCGTTTGGTGTAGTTGAATAGAACTTGTGGTTTGATAAGATAAATAACAGACATTAAAAAAGAATTGAAGTTGTTTTGTAAGGAGCAGACGGGAAGGAAGTTAATTTGGGAAACCATTCCAAAAAAAAAACATTTAAGAATGAAGTTTCTCTTCCTGGAGCACTGAATGTTAAGATCTGACAAAATACTAAGAAAAGTCACTTAAGAGGGTGAGCTGTGTATTCCCTTCGTTAATCTAGGGTGGCTTGTGTTCTTCAACTATTTGGATTTCAGTGAAACTCAAACAATGGAAAAATAAATGTTGAGCTGTCATAACTTCAGTAGCTGAATGTATGTGTTTGGAATTTGTATCTGCTGGACTATATGTGAGGAAAGGTTACAGGTTTATGGTGGGTACAGATGTGTATTTGTGGCAGGCTGTTGTCAGTACTGCACAAGTATCTTAAAAATATTGCACAGATGTCATTAAAAATACTTTAAGAATGTTGGATATGCTAAATATCTACTATACATAAACAGGGGTAAACACTGAAGGAGTAGATGTGAAATACAGTCAAGAATACGTGCAGATTTGTTTCCACAAGCTGTTAGTGTCTTACATTAGGATAGCTGGAGATAGCCATTATTTTTGAGAGCCTTGGTTTTGCTGTTAGATTACTTACTGGTTCCATGTGAGGTAGTATAAGCTGTTACTAAAAAAAAAAGAACAAAAAGCTGCCATAATGATGGACCTGGTTAATCTCACAAATCTTGTCCTTTTCCATGTAATAGTTTGCTGATACTTGGGACAAGAATTTAATTGCAGGATCTAATAGCACAAGTGCATCTATGTAGTGGACCATTTAGTCATTATTTGCAGTACAGAGTACACACAAATACTTACCTTCATTGTGCTCTGTGTTTAGTTTTGCAAGAAGAGGTACCTGTAGACAGTGCTCACAACTTTCACCGTGTAGTTTCTCTGTGATATATGAATGTATCTTCTCATTCTTTGACCTGTAATTTGGTGAAGTGTGGGTTGCTTATGGATTTCTGCAGCATTGGCCACAGTGACTCACAATTAGACTCTTGGATGGTTTTGGATCTTCTCTTGCACCTTTCAGACCATGGTATCTTCTGTGGTCTATAAGACTGACTGTATGTGTTATAAAACTCATCTTTATTGCTAATGACCAGACATGTTCTACAAGCTCTGTTCAGTATTGACGAGACTTGTCTTAGGACCAAGATTCTGTCATTAGTAGTACAGATAACCTAGCTGGAGACGTTTGAGCAGGATTTTCTTTTGAAATTGCTCCTTTACCAAAGTTGCCTTGTTTTGTTGTTTGGTGATCCACCTTGTGCTGAGGGAACGAGCCTTGATAACTGTTCCAGTACTCTTCTAATGCTCTACTCTCTGCTTTGCGCAACATTAACATATTTTTAAATGAACTGACAGTAGACATTTTTGTTGCAG
Seq C2 exon
GGGAGTTGAAAGTGAGCAGGTATCCTATGCTGCTTTGGCTCACTGATACATCATTGTGGAGCAGCAAATTGAACCCAGTCGAGCTTGGGATTATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375:ENSGALT00000023225:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]