GgaINT0029261 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:10091529-10093914:+
Coord C1 exon
chr10:10091529-10091555
Coord A exon
chr10:10091556-10093803
Coord C2 exon
chr10:10093804-10093914
Length
2248 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTCTTCTTGTTCTCTTACAGTAC
3' ss Score
10.69
Exon sequences
Seq C1 exon
ATGGCGCTGGCCGAGCTGTACACGCAG
Seq A exon
GTGAGCGGGGATCTGCGAGGGGAGCGGCCCGAGGGGGGGCGGCCGTAGAGGAGCTCCCCGGGGACAGCTCGCGCGGCTGCTCGGCCACGTCAGGTAGTGATAAAGTTGGCCGAAGCGGAGGCGGAGCGGCTCCGGGTCTCCGCGCGGTGCGGGGGCGCCGCTCCCCTTCTCGCCGGGAGAAGTGCGCGTTTTCTGAGCGTGGCCGTGCGGGTTGGGGGGGGTTACAACGAGCGCCGTTCCTCCTTAGCGCGGCCGGTGCGACTCTTCCCGCTTTTCACGTCGTCAGCGCGGCGTTGTGAGGTGGAGCTGTTTGCTTAACTCCGAATAACAAATATCGCAGATCCATCGACATCCTCCCTCCTATCGCCCATCCGGGTGCCGTCCCGGCGCTGCTTTGCCTTTCGTTGTGCCGCGTGAGCCCCGCGGAGCCGCTGCGGGCGGCCGTGTCGGGGAGCGGAGCGATGCGGGGCGATGCGGGGCGGTGCGGAGCCGCCCGGCGCGGCGTTTACCTGCGGGGCAGCGCAGCGCTGCCCGTGTGCCAACGGAGGCTCCTTCCCTTCCCCGCGGGGCGGTTCCCGACGGATCGGCGCTGCTCTGACCTCCTCGTCGTCCTCCTCTTCTCGGCTGTGACCCGCTGCGGTCCGTTCGCTGAGTCGGGAACGCGCCCCGTTCCGCTGTGGGTCTTTGGTTCCGGTGTTCTTGGTGCGTGAAATGACAGCAAGCACAGAACTCTGTGCAACAGCTGTGGATGGGTACGTACGTGCCTTTAAAAGCCGCGACCGTGCAGGAATGACACGGAAGTCAGCTTGTCCATTACTGAGCACCTCTCCTATGGAGACCAGCTGAGGGAGCTGGGTTTGGGCAGCCTTGTTCAGAGACCCCATAGCGGCCTTTCAGTACTTAAAGAGAGCTCGTAGGCGGGAGGGAAATGAACTTTACACGGGTAGACAGTGATAGGACAAGGGGGAATGGATTTAAAGTAAAAGAGGGGAGATTTGGATTACGTGTTACAGGGAGTTTCCAATGAGAGGTGGTGAGTTGGTGGTGCGGGCTGCACAGCTGCACGGGCTGCCGTGTAGGGCTCCCTCTGAGGTGGGGGGGTGGGGTGGGAAGAAGTTGTTTCTGCCAGGAATTGCAGTTTCAACACTGAAATGGAAAGGTTTAGGAGCCCCCGAGGTGGCTGTGGCTGTCCGAAGCTCCATGAGCTCTTGTCTGAAGTTCACTTTTCAGGGGGAGCTGCAGCAGCTGTCATAGGCTCATTTAACTGCAGCGCGGAGCTGATGAACCGAGCGTGCGTTGAGCTGGGATAGGGGAGCTGGATGAAGGCTTCTGTCCGTCAGAACAGCGAGATGCTGAAATGATGATCATATGTCATGGTTGCTTCTGAGAGTAGGGACTGAATGCTGCTGTGCTCTGTGGAGAGAGGCAGTCGGGCCCACATGAAGCTCCCTCTGCTGCGTACGGTGACTTTGAGGCTTCACTTTCCCTGACGGCTCTGTCCTTCCTCCTTCCTCCTCTCCCGTCCGAGCTGTATTCAGTGCTGTCTCCATTGCCACTGAAGACAGCTGCAGTGCAGAATGTAAGAAGTGTTTTGCACTACAGCTTAAGGAAGGCGGTGCTGTGGCAGAAATGGCCTCAGATCCCTGAATAGATGTGATTTCAGGGCTGTTAAAAGCAGTGTGTAAATGCACGGGTGCTGCTGTAAGGAGGTCCTGTTAGAAGAAAGGTGCTGTGTGGCCTCCTTGTGTGCACATCCATCCTCTGGCACAGTGCTTTCTGAGCTCAGCATCCTGTATTTGAATCCAGGGAAGCGGTTGTCTCAGTTCTCAATGAGATGCTTTCTCTGGTCGCTGCTCACTGGAATCCTTAAGAACCAGCGCTCTCCTCTAAGGGAGGAGAGTTTCATTCTTTCCTCAGTCCTAGGGGATTTGAAGGGCCTGGCAGCAGCCTGGCCTCTGTTCAGCTTCCCACTCCACACATTGCTCAGTGTGGAGGCCAAACAGGAGCAGAATGAGTACGTCTGAGATTGAGCCTATTCTCTCACTCTCTCTTTTCTCTTTTTCCGGTCACAAAGAATAACTAAAGCACAAAGGTACACCCCAGTGAAACGGTCAGCGCAAAGACTGATCCCGCAGAGTCCTGGCATCCACGGCACCCTTTTAGGCTGCATTTGTTTGCAAACTGTCTTTTTGTGGCACGGTGTTATGGCAATAGCTGAGTCGGCTGCCGTCTTCTTGTTCTCTTACAG
Seq C2 exon
TACAACAGGGTTTGGATTCCCGACAGCGAAGAAGTCTGGCAGTCTGCGGAAATCACCAAAGACTACAAAGCAGGAGACCGTTTTCTCCACGTGCAATTAGAAGATGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0273614=Myosin_N=PU(85.4=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]