BtaINT0098185 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58176957-58183250:+
Coord C1 exon
chr10:58176957-58177070
Coord A exon
chr10:58177071-58183139
Coord C2 exon
chr10:58183140-58183250
Length
6069 bp
Sequences
Splice sites
5' ss Seq
TTGGTGGGG
5' ss Score
0.88
3' ss Seq
TGTCTTATTCTCTTGGTCAGTAC
3' ss Score
5.21
Exon sequences
Seq C1 exon
ATGGGTGTAACTGAGGTGGAACTGGGTAAACTTGGGCTGTTTACTTACCAGGTTGGGTCTCAGCTGCGGGGCTCTAAACAGCTGATAGCCTTGCCGGCGGAGACACCAGGCTTG
Seq A exon
GTGGGGTGTGGGCAGCCCGGGGGTCCGGGGCTGAGGAGGACATTTGTGTTCTTGCTGGAGAAAAACAGACTTTGGTTTCACGCGACCTGTTACATTTCATGCTACTTTGAGCTAAAACAAACCAGCCTGTGCACTCTCAAGGAGACGGTTGCGTTGAGAGTTCAGGATTATTTTCTAGGCAGGCTCATTTAATTAACAAGTAGTTCAAAGAAGGAGTCCCAAGCTTTGGCTCCCTGGAGTCCTGGCCTTTGAGATGCTCTGTGTGGTATTTGGTGAGTTACTGACCTCTCTGGGCTGGAGTTTGGGAATCAGTTAAACAAAGGGCTTGGGTTGGTTTAGTGATTTTTGCATCACTTCTCAGAGCCCAAGGATTCCATGGAAAGGCCTGGGGGACCTCAGCTGCAGAACATGGTAGGCTACCACCATTTCGTTTGAAGCGATCTCTAAAAAGAACTTTGACTGACAACTTGGAAAAGACAATCTCCTGGGACCCTTTCAGCTATAAAATTCTATAGTGGCCAACTCTTGATAAATGGGATAGTCTCAAATTATTTTTATCATAAAAATATTAGTGATTTATTTTATAATAAAAAAATTTTTATTATAAAAATTTCAGTTTTATAAAGTTAGTAATAATGTTTTCGATAGCAGATCTGATGTGAAAAACAGTAGCCCATGGCTACAAGTATGTGTGGAGTGTGGGTGTGGGTGTCTGCTTGTGAGGCTTCTGTCCACCTGTTTGCCTGGGTGTGTATGTCAAGTGTGTGTCATCACCTGCCAGGTCATTCTTTTTTAATATTTGTTTGTTTATTTGTGCTGGGTCTTAGTTGCAGCATATGGTATCTAGTTCCCTAACCAGGGATGGAACCCCAGCCCCCTGTATTGGGTGCGTGGAGTCTTAACCACTGGACCACCAGGGAAGTCCCTGCCAAGTCATTCTTTCTTTCTCTTTAATATTTAGTTATTTATTTGGCTGCACTGGGTCTTATCTGTGGCATGTAGCATCTTCGATCTTTGTTGCAGCACTGGAATCCTTTAGTTCTGGCATGGGAACTCTTAGTTGTGGCATGTGGGATCTAGTTCCCTGACCCCCAGCCCCCTGCGTTGGGAGTGTGGAATTGCTAGCCACTGGACCGCCAGGGAAGTCCCTGCTGGGTCATTCTTCCATTTTCTCTCTCTCTCTGTTTCCCTCCCACCCACCCCACCCCACTCACAAATATTACTCACCCCATGCCACATTTCAGCAAGCTCCTACTCTTAGCTAGCTGTCAAGAATTAAAGCAACCCAGACAACTTAGGGAGTCATGATTGATATCAAATCAATGATATACATACATTTTTGTTTGATAAGTGAGGTAGCTTATATTAACTAATAGATTAATAAATGTGCTTCTCAGCCAGCTTTGTCCTAATCTAGTCCTAGTACCTGAAACTTATACTTATTCTTTATTTCCTTCAACAACTTATTATGAAAATTTAAAGTATATAAAAGAGTTGAAAAAACTTTACAGTCAGCCTCTGTCCCACCACCTAGACTGCAGTATGAATATTTGACTGTATTTGTTGTATCGCATCTGTGCATCTTTTTATACTTCTGTCCACTCCTCAGCCCATCTTATTTTGGGAAGCATTTTAGGGTAATTGCATACATCAGTATGTGTCCTCCTCAATATTCCAGTATGCACGTTGTTCAGAGTTGCATATTCAGGTTTTGGGTTTTGGCCACACCACATGGTTTGCAGCGTCTTAGTTCTCCGACCAGGGATTAAACCTGAGTGATGGCAACGAAAGTGCCAAGTCCTAACCACTGGACCACCAGGGAATTTCCAAGAGTTCCATATTTGTTTAGTTCTTCGTGTAAAATTTCCAGACAACAAAATGTACCAATCTTAAGTGTACATCCTCTGAGGTTTGAAAAGTGGTAACACCTATTAACCAAAACCCCTTCAAGGTACAAAATGTTGCCATTGCCCACAAGAGTACCTCCCTGGACCCACCATACCTGGAGGCGACTATTGTTCTGAGTTTTTCTCCACATTACATTTGTTCTACTTGTTCTAATACTACATTTAAAGGAGTCATACAGAATGTACTCATTTGTGTACAGCTTCTTTAACTCAGTCTAACACTTGGAGATTCACTCATGTTCTTGCTTATATCAGTAGTTAAGTATTTTTATTGGTAAGTAGTAGCCAATTGTATGAAGATACCACAGTTTTATGTTTTTTTATTCTCATGGACACAGAGTGGACACAGAGTCTAATTTTCAGCAGTTATGAATAAAGTTACTATGAAATGTTCACGTACAAGTCTTTTTGTAAACATATTTTTAATTTTTGCCTTGTTTTGTTTTGGCCATGATGCACACATGCAGGACCTTAGTTGCTTGACCAGGGGTCGAACCTGCCCCTTGCAGAAGTCTTACACACTGCCAGGGAAGTCCCATATTTGCCTTTAAAGATGATATATTCTGATTTATATTACTTATAAAAGTAAAATATGCAAAAACAGAGAATATATAAAATCATAGTGAAGAAGAATGAAAAGTCATAATTATTGCCCAGAATTTTATGTAACTGAAATAAGTATGATCTCTCAACCTAAGGAAATATTTCCCCATGGTGGAAAGGCACCAGCAGACCATGGGCCACGTGTTCAGACCAAGCCATCGTTTGGTCATGACATTTGCCTTCTCAGCTGTCCAGAAGCAGAGGTTCACAGAGGACAGTGTCTTGTGCGTGACTGTCCCCAGAGTCAAGGGTGGTGCCAGTGCCAGTTCAGTGACCAGGGACTATACTCAGCAGGATGGCAGGCACTTAGGCAAAAGTGCCTTGACTTTTTCTCCTACAGGCACAAACATTGCCTGTTACAAGAATTTACACACTTGACAATTACCTTCAGACAGTCCATCTGTCCTGGTGAGGGACAATGCCAGAGGACCAGCATTCCTTTGGCCTGTGAGTATAAGGAGGTAGAACAGGGTGCCACTGTAGGCACCAGCCTGAACTGGTTGCTCATCTCAGGTCTGCTTCTGGGGAACCTGGAGTCCCTGAGGCTAGTTTTCTCTGGGAAATGAGGGTTAGATGCTGGATGGCCTATTAGGCTTCATCTAGATCTGGGATGGGTTATGAGCTATCCAGCTTCTGGATTCAGGAATTTTTCTAAGTGCTGCTTCATGTCTCCATGTGAGTGCTTCCCAATTCTTGTTCCATTTGGCCTGGTTATGTCTCAGGGTAGAGGGGTATCCCATAGGGGTACCGCATTGCTAGAAACCACTGATATGTGAGCAGAGAGATGCAAATATACACATATGCACATACAGCTCTAGGTTAGAGATTGGCTGAGTTAGCAAAAAAAACCATGTTGACAAACCAGCACTGTGCCAGACACATACATGATAGTTGCCTAGGTGTTGAATCTGTAAATTAATGGCTAGATGGATGAATGAACAATAGAGTAAAGAACAAATAAATGAATGGATGACCACAGAAGAATGTGAGATGTGGGGTCCCGGTCAGAGCAAAAGCAGTCAGTGTATGATGCTGACAGCACGCATGGAGGAGAGAGGCGAATGGCTCGTAGAGTCCTATCACAGCTGCCTGGTAGGGACATGGCAGTCACTTTGTGTTTATCTCAAGCAGCATTCAGGAACCACTGGTGAATTCCGGCGAGTGAGGCTGCCTGCTTCCCAATTTATGAGTGTGAATTGTTACATTGTGATAACAACATACCATAGACTGGGTGTTTCAGCAACAGAGGTGTATTAATATTTTCTCACAGTTCAGGAAGCTGGACAGCCCCCGATCAAGGTGTTGGCAGGGTTGGTGTCTGGTGAGGGTCTTCTGTTTGGTGCAGACATCTGTCTTCTCACTGTGAACTCCCATAGCCTTTCTTTTTATGCATGCAGGTAGAGAGAGTGTGTTTGCAAACTCTGTTGTATCCCTTCTTCTTATGACACTAATCCTATCAGACCAGGGCGTTGTTACCTCATTTAGCCTTAATTATACCTCTTAAAGACCCTGTCTCCAACTACACTCACATATGGTTTAAGGCTTCAACATATGAAGTCTGGGGAGTGGGAACAATTCAGTACATAGCAGTGTGGTTCAAAAGCCTAAGGACTTGTACATCAGCACAGAGCCAGGTGGGAAACTGAGCTTGGAACTTCTGCGCTTCCCATGGAGGGAATCCCTGGCTGCTGACCAGTGCAGTAAGACTGTGGTAACACCGCTGTAACAAGACTTCCACAGCATTTTACAAAGTGCCATCAACTACACAGCTACACAGTCTTATTTAATTTTCCTGGCAAACCTATGAAGTAGGTCTTGTGCCCATTTTGCAGATGAGAAAAGTGAGCAGGAAAAGTGTCTGGCCCAGAGCCACATAGTCCATTAGTGATGAAACAAATCCCTCTGCTCCAATTCATGTCACAGTGCTCAGATCTTCCCACTGAGGGACTCACAGATTTCCCCTCCCAGGCTTTCCTTTTCTTTTCAAGATATATTCGGAGGCTTTGGGAATTCTGGTACTTGTGACATGAAGCAGCTAGACCTGGTGCGTTGCAGATACACTAAAAATTACCTCAGGGGCTTTCCTGGCAGCTCAGTGGTAAAGAATCTGCCTGCCAGTGCAGGAGACACGGGTTTGATCCCTGATCCGGGAAGATCCCGCATGCTGCAGAGCAGCTAGGCTCATGCACCACAACTATTGAGCCTGTGCTTTAGAGTCCAGGAGCTGCAACTACTGTAGTCTGAGTGCCCTAGAGCCTGTGCTCTGCAGCAAGAGAAACCACCACACTGAGAAACCTGTGCACTGCAGCTAGAGAGTAGCCCCTGCCCTCCACAGTTACAGAAAAGCCCACATGGCAATGAAGACCCAGCACAGCCAATAAATACATTTTAAAAGTTCAGCTGGTGAAGAATCTGCCTGCAATGTGGGAGACCTGGGTTTGATTTCTGGATTGGGAAGGTCCCTTGGAGAAGGGAAAAGCTGCCCACTCCTGTATTCTGGCCAGGAGAATTCCATAGACTGTATCGTCCATGGGGTTGCAAAGAGTTGGACACAACTGAGCAACTTTCACTTTCAAAAATTACATCACAAGCAAAAATTAGGTAAAAGTATTTCTAATGAACTTTGGTTCAATTCAGTCACTCAGTCATATCTGACTCTGCGACCCCATGGACTGCAGCATGCCAGGCTTTCCTGTCCATCACCAACTCCCAGAGTTTACTCAAACTCATGTTCATTGAGTCGGTGATGCCATCCAACCATCTCATCCTCTGTTGTTCCCTTCTCCTCTCGCCTTCAATCTTTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCACATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAACAGTCTTCTCCAACACTACAGTTCAAAAGCATCAATTCTTTCGTGCTCAGCTTTCTTTGTGGTCCAACTCTCACATCCATACATGACCAATGGAAAAACCATAGCTTTGACTAGATGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGATGTCTAGGTTGGTCCTAACTTTTCTTCCAAGGAGCAAATGTCTTCTAATTTCATGGTTGAAGTCACCATCTGGAGCCCCAAAAATAAAATCTGCCACTGTTTTCACTGTTTCGCCATATATTTGCCATGAAGTGATGGGACCAGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTCTTTAGTTCTTCACTTTCTACCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCAGCAATCTTGATTCCAGCTTGTGCTTCATCCAGCCCAACGTTACTGACATAAGTGAACAGAGAAAACTTTGCCTGAGTCTAGTCATCTAACAATTTGTATTTTGCTTTTAAAGTGCTGAAATTAAACCTGTCTTATTCTCTTGGTCAG
Seq C2 exon
TACAACAGGGTTTGGATTCCTGATTCTGAAGAAGTTTGGAAGTCTGCTGAAATAGCAAAGGACTATAGAGTTGGTGACAAAGTTTTGCAACTCCTGCTGGAGGATGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763:ENSBTAT00000004905:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development