GgaINT1018767 @ galGal4
Intron Retention
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8334755-8337132:+
Coord C1 exon
chr10:8334755-8334781
Coord A exon
chr10:8334782-8337021
Coord C2 exon
chr10:8337022-8337132
Length
2240 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTCTTCTTGTTCTCTTACAGTAC
3' ss Score
10.69
Exon sequences
Seq C1 exon
ATGGCGCTGGCCGAGCTGTACACGCAG
Seq A exon
GTGAGCGGGGATCTGCGAGGGGAGCGGCCCGAGGGGGGGCGGCCGTAGAGGAGCTCCCCGGGGACAGCTCGCGCGGCTGCTCGGCCACGTCAGGTAGTGATAAAGTTGGCCGAAGCGGAGGCGGAGCGGCTCCGGGTCTCCGCGCGGTGCGGGGGCGCCGCTCCCCTTCTCGCCGGGAGAAGTGCGCGTTTTCTGAGCGTGGCCGTGCGGGTTGGGGGGGTTACAACGAGCGCCGTTCCTCCTTAGCGCGGCCGGTGCGACTCTTCCCGCTTTTCACGTCGTCAGCGCGGCGTTGTGAGGTGGAGCTGTTTGCTTAACTCCGAATAACAAATATCGCAGATCCATCGACATCCTCCCTCCTATCGCCCATCCGGGTGCCGTCCCGGCGCTGCTTTGCCTTTCGTTGTGCCGCGTGAGCCCCGCGGAGCCGCTGCGGGCGGCCGTGTCGGGGAGCGGAGCGATGCGGGGCGATGCGGGGCCGCCCTGGCGCGGCGTTTACCTGCGGGGCAGCGCAGCGCTGCCCGTGTGCCAACGGAGGCTCCTTCCCTTCCCCGCGGGGCGGTTCCCGACGGATCGGCGCTGCTCTGACCTCCTCGTCGTCCTCCTCTTCTCGGCTGTGACCCGCTGCGGTCCGTTCGCTGAGTCGGGAACGCGCCCCGTTCCGCTGTGGGTCTTTGGTTCCGGTGTTCTTGGTGCGTGAAATGACAGCAAGCACAGAACTCTGTGCAACAGCTGTGGATGGGTACGTACGTGCCTTTAAAAGCCGCGACCGTGCAGGAATGACACGGAAGTCAGCTTGTCCATTACTGAGCACCTCTCCTATGGAGACCAGCTGAGGGAGCTGGGTTTGGGCAGCCTTGTTCAGAGACCCCATAGCGGCCTTTCAGTACTTAAAGAGAGCTCGTAGGCGGGAGGGAAATGAACTTTACACGGGTAGACAGTGATAGGACAAGGGGGAATGGATTTAAAGTAAAAGAGGGGAGATTTGGATTACGTGTTACAGGGAGTTTCCAATGAGAGGTGGTGAGTTGGTGGTGCGGGCTGCACAGCTGCACGGGCTGCCGTGTAGGGCTCCCTCTGAGGTGGGGGGGGGAAGGGTGGGAAGAAGTTGTTTCTGCCAGGAATTGCAGTTTCAACACTGAAATGGAAAGGTTTAGGAGTCCCCGAGGTGGCTGTGGCTGTCCGAAGCTCCATGAGCTCTTGTCTGAAGTTCACTTTTCAGGGGGAGCTGCAGCAGCTGTCATAGGCTCATTTAACTGCAGCGCGGAGCTGATGAACCGAGCGTGCGTTGAGCTGGGATAGGGGAGCTGGATGAAGGCTTCTGTCCGTCAGAACAGCGAGATGCTGAAATGATGATCATATGTCATGGTTGCTTCTGAGAGTAGGGACTGAATGCTGCTGTGCTCTGTGGAGAGAGGCAGTCGGGCCCACATGAAGCTCCCTCTGCTGCGTACGGTGACTTTGAGGCTTCACTTTCCCTGACGGCTCTGTCCTTCCTCCTTCCTCCTCTCCCGTCCGAGCTGTATTCAGTGCTGTCTCCATTGCCACTGAAGACAGCTGCAGTGCAGAATGTAAGAAGTGTTTTGCACTACAGCTTAAGGAAGGCGGTGCTGTGGCAGAAATGGCCTCAGATCCCTGAATAGATGTGATTTCAGGGCTGTTAAAAGCAGTGTGTAAATGCACGGGTGCTGCTGTAAGGAGGTCCTGTTAGAAGAAAGGTGCTGTGTGGCCTCCTTGTGTGCACATCCATCCTCCGGCACAGTGCTTTCTGAGCTCAGCATCCTGTATTTGAATCCAGGGAAGCGGTTGTCTCAGTTCTCAATGAGATGCTTTCTCTGGTCGCTGCTCACTGGAATCCTTAAGAACCAGCGCTCTCCTCTAAGGGAGGAGAGTTTCATTCTTTCCTCAGTCCTAGGGGATTTGAAGGGCCTGGCAGCAGCCTGGCCTCTGTTCAGCTTCCCACTCCACACATTGCTCAGTGTGGAGGCCAAACAGGAGCAGAATGAGTACGTCTGAGATTGAGCCTATTCTCTCACTCTCTCTTTTCTCTTTTTCCGGTCACAAAGAATAACTAAAGCACAAAGGTACACCCCAGTGAAACGGTCAGCGCAAAGACTGATCCCGCAGAGTCCTGGCATCCACGGCACCCTTTTAGGCTGCATTTGTTTGCAAACTGTCTTTTTGTGGCACGGTGTTATGGCAATAGCTGAGTCGGCTGCCGTCTTCTTGTTCTCTTACAG
Seq C2 exon
TACAACAGGGTTTGGATTCCCGACAGCGAAGAAGTCTGGCAGTCTGCGGAAATCACCAAAGACTACAAAGCAGGAGACCGTTTTCTCCACGTGCAATTAGAAGATGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]