GgaINT0029262 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:10093804-10094739:+
Coord C1 exon
chr10:10093804-10093914
Coord A exon
chr10:10093915-10094573
Coord C2 exon
chr10:10094574-10094739
Length
659 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGG
5' ss Score
5.19
3' ss Seq
CCAGCCCTTTCTGCTTGCAGGAG
3' ss Score
9.08
Exon sequences
Seq C1 exon
TACAACAGGGTTTGGATTCCCGACAGCGAAGAAGTCTGGCAGTCTGCGGAAATCACCAAAGACTACAAAGCAGGAGACCGTTTTCTCCACGTGCAATTAGAAGATGGAACT
Seq A exon
GTAAGGAGAACAGCCTTAATTGCTGTGGGGTTTGCTGTGTAGAAACACAGGACACACCAGGTCTAGGTGAATTGTCCGTACTTCCCTTTACGCTAACTATGCAGTGGCCAGGATTTAATCATTCGGAATGCTGTACAGTAAATAGCTTTTGCCTAAAAATATCTGCAGTCCTACTGCCTGTGTCGTGTGAGTTTATAAGCCTGATATTGAAGTAAAAAGATGACTTTTGAAACAGGTGAAAACTCATTCTTGAAGTAAATCAGAAGAGCAAGGCGAGAATAATTCACCCCACAGAGGCAGCTGTTGTCTTTCTTCCCCCCTGAAGTTATTGCTTTATGGAAGAACTCTTACTTTTGGTCTCTGTGTTCTTTACTGATGTAGTATTTTGAATAGGATATCTGTATTTCTGCATTGCTGTTCTGTAAGCCCAAATATTAAAGAAAAGCGATGTACCTTTTAACAATACAAAACCAACAACAAGCACCACCTTACCTTCATGATTCCCCAGTACCGTATGTTGAATGAGATGTATGGACCTGATGAAAGAAAAGACCAGATGGTGCTCCATCAACCCCGTACCTTCGTGTACAGACAGAAGATCCGTTTGTATTTAAGCAAACAGTGAATGCCGTGCCATTCCCAGCCCTTTCTGCTTGCAG
Seq C2 exon
GAGCTCCATTACCCCGTTGACCCATCAGCTTTGCCGCCTCTGCGTAATCCCGACATCCTTGTTGGTGAGAACGACCTGACTGCCCTCAGCTACCTCCATGAGCCCGCTGTTCTGCACAACCTTAAAGTTCGTTTCGTGGAGTCTCGGCTTATCTACACCTACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PU(85.4=94.6)
A:
NA
C2:
PF0273614=Myosin_N=PD(11.9=8.9),PF0006316=Myosin_head=PU(15.7=58.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTTGGATTCCCGACAGC
R:
CACTGTAGGTGTAGATAAGCCGA
Band lengths:
270-929
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]