MmuINT0104479 @ mm10
Intron Retention
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75242762-75245135:+
Coord C1 exon
chr9:75242762-75242872
Coord A exon
chr9:75242873-75244969
Coord C2 exon
chr9:75244970-75245135
Length
2097 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
ACGTCTGTCTTTGTTTATAGGAG
3' ss Score
10.26
Exon sequences
Seq C1 exon
TACAACAGGGTTTGGATCCCAGATCCTGAGGAAGTTTGGAAGTCGGCTGAAATCGCAAAGGACTACAGAGCGGGTGACCGAGTCCTCAGACTTCTGCTGGAGGATGGCATG
Seq A exon
GTGAGGGTCTCTGCGGTCTGTAGTGGATAATGACATATACAGTCATGACACCAGGGCACCAACAGAAGGTCCAGAGGGACAGTGCAGGCGAAGGAACCTGCCCCGTATCCAGGAAGGCCAGCTAGGGCTGGGGGTGCCTTCCTGCTGCTCCACACCAGCAGTCTGTCCATCTATACGAGGTTCCAGATTCGTCTCCAGATGTGTGCCTCTGCTGTGTTCCAAGTGCTCAGCCATCAGCTGCTGCAGTTTCTGGGTCTCACTCAGTACAGCCTGGGCAGAGGAGGAACTTGGAGGGAAGTAGTCTGATCCCGAGGCAGGATCCAGATAGGAAGAGGGAGCTCGCTCTCGGGGAGAGGTAGGAGGTGTGGAAGGAGACTGCAGAGCTAGAAAGCCAATCTAGGGTGTATAGATTATATAAGGGCTGGGAGGGTGTGTGGAGGGCACAGAGACAGAACCAGAAGGCTCGGGCTTCCTCCAACGCTCCAGTGGGCTGTGCTGCTGCAGAGTTACAGCCACAGGCCATCCCAGTCTTTTGATCATCAGCAACCAAAGATTTCATTATCAGCTTTAAGAAGCCACCCCTCTGGGTTCACAGCTAACACTGACTTTGTGCTGTTAGACTCAAGTGTTAGATGCAAAGCTGGATCAACTCTCTGTGCTCCATTGGATTCAGGGGTGGGCGGGGAATTCCTTATAAACGTTCAATGCTGCAATTTACAAAATACACAGAGACATGCCACATACTACTTCCGGGCATCTGGTCCTGGATATCAGACCTTTCCTGAGATCTCAGAAGTTGCAGAGAAGGAAAGATCCATGCTCTGGGGTCAGGCATCACCACTTGTTAAGTCCGTATCCCTTACTCTCCACACACAGCCAAGGAGCTAATGACATTGTGACATCACAGGTCCTGAAGTGGAGGCATCTTGCAGGGTGGCTTGCTCTTCAGTAGCTCTCTGTAACTGAACGCCACACTGGGTCCTAAGTACCTCAGGAAGCTGAGCCTAGGGAGGGAAGACTTGAGAAAGCAGCTGCTTGTGCAATTAGCCGGCTCCAGGTGGCTGTTCCCTGGCCAGGGACGCAGAATGGCAGGCAGCCAGTGCCTCTTACCTTAACCCTTCCTTGTACCAGAGGACAAAGCTTGCTTTGTGAAGAGTATGTCACCCCTGCCTCCATCTCTCAGTCTCATGTTTTCCCCTCCCCCAGAGATGACTAGCTAGCTGATAAGCTCTCTCTTTCTCCCTCTCTCCCTCCTCCCCTTCAACGTGTCAACTAAGGACCCACTTGGCAATTTCAGAGCCATGAGGCACCTTAGGCTGTGTTGTCCTAGCAACAGCATCTTTCCACGTGTCCATTCCCAAGGCCCCTATGGTAGACATAGGGTGGGGCCACTGGATGCATGCTCATGGGCTTCCTACCACCTTCCATCACAGCCTCTTCAGCTCTGAGGACCCCTTCACAGAAGAGGGGAGTCAGGTAGAGGAAGGGGACTTGCTTTAAGACACACAGTCAATGATCTGATGCCCTGGCTCCCAGTTTTTCATTGCCTTGAGTCACCTATAAAGGTTATTTCCTTTTTCCTCTACTTAAAGTTTCTAAGACAGGTGTGGTGACACTCAACCTGTATTCCCAGCAGTTCTGAGGCAGGAGGATAGAGGGTTTGAAGTCAATTTGGACTACCTAGTAAAGGACTTTGTCTCAAAAAAATGTTGTGGGGGCTGGAGAAATGGCTCAGGGGTTAAAATTACCTGCTGCCCTTGCAGAGGACCGGGGTTCAATCCAGGGACCCACATGGTGACTCACAGCCATTTGTAACTACAGCTCCAAGGGGGGGAAATCCAACGTCCCCTTGTGGCTGCTGCAGGTACTGCATAAATGTCATGCATATACACACTAGCAAGCAAACCATCCACACACATATACCCACACACAAATAACCTCTTAAAAAGTGTGGGGTGTGGTTGTTTTGATTTGGGTTTTGGTGGTGTTGTTTTAATGTGAGAAGTGCGTCTATGGGAGGTGGATAGGAGGAGACAGTTTAGCAGAAATACCGAAGGTCCTCTATTTCTAGAAGTTTACGTCTGTCTTTGTTTATAG
Seq C2 exon
GAGCTGGAATACCCTGTTGACCCAGGGTCACTGCCTCCGCTTCGGAACCCTGACATCCTGGTGGGTGAGAATGACCTCACAGCCCTCAGCTACCTCCATGAGCCCGCAGTGCTGCATAATCTCAGAATCCGCTTCGCAGAGTCCAAACTCATCTACACCTACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590:ENSMUST00000036555:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006316=Myosin_head=PU(17.7=58.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types