GgaINT1018778 @ galGal4
Intron Retention
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8337022-8337957:+
Coord C1 exon
chr10:8337022-8337132
Coord A exon
chr10:8337133-8337791
Coord C2 exon
chr10:8337792-8337957
Length
659 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGG
5' ss Score
5.19
3' ss Seq
CCAGCCCTTTCTGCTTGCAGGAG
3' ss Score
9.08
Exon sequences
Seq C1 exon
TACAACAGGGTTTGGATTCCCGACAGCGAAGAAGTCTGGCAGTCTGCGGAAATCACCAAAGACTACAAAGCAGGAGACCGTTTTCTCCACGTGCAATTAGAAGATGGAACT
Seq A exon
GTAAGGAGAACAGCCTTAATTGCTGTGGGGTTTGCTGTGTAGAAACACAGGACACACCAGGTCTAGGTGAATTGTCCGTACTTCCCTTTACGCTAACTATGCAGTGGCCAGGATTTAATCATTCGGAATGCTGTACAGTAAATAGCTTTTGCCTAAAAATATCTGCAGTCCTACTGCCTGTGTCGTGTGAGTTTATAAGCCTGATATTGAAGTAAAAAGATGACTTTTGAAACAGGTGAAAACTCATTCTTGAAGTAAATCAGAAGAGCAAGGCGAGAATAATTCACCCCACAGAGGCAGCTGTTGTCTTTCTTCCCCCCTGAAGTTATTGCTTTATGGAAGAACTCTTACTTTTGGTCTCTGTGTTCTTTACTGATGTAGTATTTTGAATAGGATATCTGTATTTCTGCATTGCTGTTCTGTAAGCCCAAATATTAAAGAAAAGCGATGTACCTTTTAACAATACAAAACCAACAACAAGCACCACCTTACCTTCATGATTCCCCAGTACCGTATGTTGAATGAGATGTATGGACCTGATGAAAGAAAAGACCAGATGGTGCTCCATCAACCCCGTACCTTCGTGTACAGACAGAAGATCCGTTTGTATTTAAGCAAACAGTGAATGCCGTGCCATTCCCAGCCCTTTCTGCTTGCAG
Seq C2 exon
GAGCTCCATTACCCCGTTGACCCATCAGCTTTGCCGCCTCTGCGTAATCCCGACATCCTTGTTGGTGAGAACGACCTGACTGCCCTCAGCTACCTCCATGAGCCCGCTGTTCTGCACAACCTTAAAGTTCGTTTCGTGGAGTCTCGGCTTATCTACACCTACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006316=Myosin_head=PU(4.9=58.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTTGGATTCCCGACAGC
R:
CACTGTAGGTGTAGATAAGCCGA
Band lengths:
270-929
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]