RnoINT0097303 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82182703-82185405:+
Coord C1 exon
chr8:82182703-82182813
Coord A exon
chr8:82182814-82185239
Coord C2 exon
chr8:82185240-82185405
Length
2426 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
AGATCTGTCTTTGTTTGTAGGAA
3' ss Score
9.31
Exon sequences
Seq C1 exon
TACAACAGGGTTTGGATCCCAGATCCTGAAGAAGTTTGGAAGTCTGCTGAAATTGCGAAGGACTACAGAGTGGGTGACCAAGTCCTCCGACTCTTGCTTGAGGATGGCACG
Seq A exon
GTGAGGGTCCCTGCTGTCCATAGTGGATAATGACATAAACAGCCTGGGCAGGGGAGGAACTTGGAGGGAAGTAGTTTGATCCCCAGGCAGGATCCAGATGGGAAGAGGGAGCTAGATCTCAGGGAGAGGTGGGAGGTGTGGAAGGAGACTGCAAAGCTAGGAAGTCAGTCTAGGAGGTATAGATTACGTAAGGGTTGGGAGGCTGTGTGGAAGGCACAGAGACAGAACCAGCAGTGGTGAAAAAGAAGGCTCAGACGTCCTCCAGGGCTCCAGTGGGAGGTGCTGCTGCAGTTAACCACAGGCCACCCCAGTCTTGTTCATCGAAACTGAAGATTTCGTGACTGGCTTTAAGAAGCCACCCCTCTGGGTTGGTTCATAGCCAACATTGGCTTTGTGCTGTTAGATGCAAGTCTTAGATGCAGAGCTGGCCAACTCTCTGTGCTCCTTTGGATCAGGGGTGGGCTGGGAATTCCTTATCAACGTTAAATGCTGGAATTTACAAAAACACACATAGATACACCACATACCACCTCCGGGCATCTGGTCCTAGATATCAGGCATTTCCTGAGATCTCAGAAGTGGCAGAGAAGGAAGGATCCGTGCTCTGGGGTCAGGCCCCACAGCTTGCTAAGTCTGGATCCCTTACTCGCCACATAGGGAAGGAGCTAATGACGGCGTGATGTCACAGGTCAGGATGCTATGGTGCTGTATTGCAGGACATCTTGCTCTTCCGTAGCTCCCTGTAACTCTTACTGAATGCCACACTGGGTCCTAAGTACCTCAGGATTAAACAGGCGGCTGGGCCTGGGGAGGGAAGACTTGAGAAAGCAGCTGCTGGTGCAATTAGCAAGCTCCAGGTGGCCTTTCCCTGGCCAGGGAAACGGAGAATGGCAGGCAGCCAGTGCCTCTTACCTTAACCCTTCCTTGTACCAGAGGACAAAGCTTGCTTTGTGTAGAATATGTCACCCCTGCCTCCATCTCTCAATCTCATGTTTTCCCCTCCCCCAGAGAAGACTAGCTGGCTAATACATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACCTGAGCTTCCTCTAGTAGTAAAGCAGGAGTGGAGGCATCAGGATACTGTTATTACGGGGCAGCGGCAGCGGGGGGGGGGGGGGGCAGTCCTTTCAGTCAGGATGCCATGAAGGACTACAAAATCGCCTTCCTTGTGCTCAGCAGATGCTTTGGGGAATGTGAGATTAGCTCCTAGGAAAGAAGGTCCGAACTGGGGAAGCCATTCATCCACAGTCGAGGATGACAGGGCCAGCCCCCTCCCCCACACAAGCTCCTTTAGATACTTCTCATCCTCCAGTGTGTCAACTAAGGAGACACTTGGCAATTTCAGAGCCATGAGGCACCTGAGGCTGAGTTGTCCCAGCAACAGCATCTTCCCATGTCTACATTCCCATCGCCCCTATGGTAGACATAGAGTGGGGCCACTGGATACATGTCCTTGGCTTCCTACCACCTTCCATCACAGCCTCTGCAGCTCTGAGGACCCCCTCACAGAAGAGGAGCGTCAGGTAGAGGGAGGGGACGTGCTTTAAGACACACAGTCAATGCTTTGATCCCCTGGCTCCCAGTTTTTCATTGCCTTGAGTCACCTAGAAAGGTGATTTCCTTTCTCCTCTACTTAAAAGTTTCTAAGACAGGTGTGGTGACCCACCTGTAATCCCAGCAGTGCTGAGGCAGGAGGATAGAGGGTTTCAATGTGAACTACCTAGTAAGACTCTGTCTCAAAAAAACAAACAACAAACAAAAACTTGTGGGGGCTGGAGAGATGGCTCAGGGGTTAAAAGTACCTACTGCCCTTGCAGAGGACCAGAGTTCAATCCAGGGACCCCACATGATGACTCACAGCCTTTTGTAATTAGTTCCAAGGGGGAAATCCAACGCCCCCTTGTGGCTTCTTCAGGCACTGCATAAATGTCATGCATGCAAGTCAAGCAAACATCCACACACATACACCCCCCACACACAGCCTCTTAAAAAGCATGGGGTGGGGCCAGAGAGATGGCTCAGTGGTTAAGAGCACCGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCATATGGTGGCTCACAACCATCTGTAATGGAATCCGATGCCCTTCTGATGTGTCTGAATATAGTGATAGTGTACTCATATTCATAAAGTACATAAATAAGACTTTTTAAAAACTGAAAGAAAAAAGTGTGCGGTGGTGTTGTTTTGGTTTGGGTTCTGTTGTTGTTTTATGGGTTATGTTGTTGTTTCTGTTGATGCTTCTACGAGAGGTGGGTAGGAGTAGACAGTTTAGCGGTAATACTAAAAGTATTACTAAAAGCCCTTTATTTCCAGAAGTTTAGATCTGTCTTTGTTTGTAG
Seq C2 exon
GAACTGGATTACCCTGTGGACCCAGGGTCACTGCCTCCGCTTCGGAACCCAGACATCCTGGTGGGTGAGAATGATCTCACAGCCCTCAGCTACCTCCATGAGCCCGCGGTGCTGCACAACCTCAGGATCCGCTTCGCAGAGTCCAAACTCATCTACACCTACAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=WD(100=75.7)
A:
NA
C2:
PF0006316=Myosin_head=PU(15.2=58.9)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]