Special

HsaINT0108843 @ hg38

Intron Retention

Gene
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52279509-52282892:-
Coord C1 exon
chr15:52282782-52282892
Coord A exon
chr15:52279675-52282781
Coord C2 exon
chr15:52279509-52279674
Length
3107 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
ATTTTTATCTTTGTCCATAGGAG
3' ss Score
11.08
Exon sequences
Seq C1 exon
TACAACAGGGTCTGGATTCCCGATCCTGAAGAAGTTTGGAAGTCTGCTGAAATAGCCAAGGACTACAGAGTTGGTGACAAGGTCCTGCGACTCCTGCTGGAGGATGGAACG
Seq A exon
GTGAGGGTCCTTGCTGTTCACAGCTACGTCGATGTGTAAAGCGGTAGCTGGGGTGTGTGTAAGGATGGGAGCACGTGGACCCCGTGGGAGGCACCCAGGGGAGGGCGCACGAGTGGGCACCAGCACCATTCCCAAATGGCCTCCTGGTGCCGGGACTCACTGATGTGTCTGTACTCCTTCCCTCCCGCCCCTGTGCTGCCCTGCATCCACCGGGCCTCTCTCTGTAATGAGGGCCCAGCTGCAGGAGCCAGGTCTGTGCCACGGCACTGCATTTCCAGGCACCCAGCATTACTGGGAGAATGCTGAAAAGTGATTCGCCATTTTGGCTTCCTGAGTCTCAGCCCAGAGATTGGGCAGAGATGAAAAACTTGGTGAGAAGTCGTTTGAGCCCAAGGCATACGCTGGTAGAGAAAAACATCAAGATGTGAAGGGGAGGAAAATGAGAAGAGGGAGATAGAAAACAGGCAGGGAGAGGGAGGAGTGGGAGGAGACTGGAGGGAGTCGGTCCACAGATATATAGAAATGTGTAAGGGAGGGAGTGTGGCAGGGACAAGAAGACATGGACACCCAGCTTTGTGTGACATTATGAGGTGCCTCTGTTGGTGCTGGTGTGGTGAGGGGGAGGTGAGGATGAACTTTAGCAGTTGCTCCTGTGGTAGGATGAGCTATTGAGGAGCTTCCCTGCAAGGCTGCATGTGCCTTCTGATGACGCAGCTTCTGAAGACTTTGCATTTGCTCTAAGTGTCCCTCATGAGTTGTCCTTGCCCACCATTGCTGTAGTGACATCCCACTGGATTAGTAGCCTAGGGTGACTGGACGGGTTTAGAATCAAGTATCTGGGTAGAGAACTGGGCAGGGGATTTGTGCTCCATCTAGATCCCAGAGGTGGGTCTGGGGAACATCATGTGAGGATTAATTGACAAAGCATGTAAATGGGTTCTGCAGACACAGGACACACTACTTCTAATCAGACTGTCCTGGATTTGGGAGACATTTCCTGAGATCCTGGGAAGGCAGATGAACACAGCGGTTAAAGACACACCCTCTAGAATCAGATGGTCTGGCGTCAGATCCTGGCATGGCCCCTTGTTAAGTCTTTGGCCCAGGCCCCCAGTTTCCCCATATGTACAAAGGAGGTAATGACTGTGCACCGTCCCAGGGTTGCTGAAGTGCGATGAGACAATCCTGTGTGCATGTTTGAAGGCAGGAGCTCTGGGAAGAGGCTCCTGCTCCCCGGGGCTTCCCTTTCCAACAGGAGCTCCTCGCAGTTTTTATTGAGTGTCTCCTGTGCACAAGGTTCTGATTAGGGATCAGATGGCTTTGTTTGGGAAGGAAAATCTCAAGGCAGCAGCTGCAGTGGCAGTTTGCTGCTTTGGTAATATCTGCAGGGCTTCAGGTGGCTACATTCCCGGCCTTGACCCGGCTGCAGAGGTGAGTAGGATGGCGGGCAGCCAGACCTCTCTTTAGCTCAACCCTTTGTCAGTACTGTAAGAGACAAGGCCTGTGTGCTGTAGGAAAATGTCACCTCTGCCTCCACCTGTCAACATAATGTTCATTACATTTTCTCCCCTCCCCCAAAGACTGTCTGTCCTTTCTGTCTCCCTGTTGCTTTCACACATAACACACACAGAGGCCAAACCAGAAGTGGGGGTTGTGGATTTACAACAGAAAAACAGAGACAAGGAAAGTCAGTATGTATGAGAAGCATTTTTCCTGATTTTATTTTCAAAAATGTTTAGGTTGAGAATATTCTGGTCGGGGTTAGGTCACAATACAATTGCATTGGTAACAGGGGAGCAGGAGCTGGCCTGAGCATCCGTGTCCAGTTGTGGATTGCCCTGAGCTGCTCGCTTTATGCAGAACAGACCAACCAGCCAGCAAAACCCCCGCCATGGACAAGGAAGCACTGTGCTAGTGAGAGAGCACAGGCTTCAGAGTGAGGCTCAGATTAACTGTGTGACCTTGGACAACAAACTCCAACTTTCTGAACCTGTCTCGTTGACTTTCTTGGTTGGGGTAGTCATGTCCTCCCTGGAAGGCAGTTTTGAGGATTAAATGAAACAATCCATGCTGAGTGCTTGGCATGGGGTCTGCACAGTGGCACTTGATGAAAGGCAGCTGGGCCACCTTGTGGAGCTGGTCCAGGACCAGAGATCAGAAGGAATCCAGAGATACTGACTGAATACCTGGAAGGCGGCCTAGGAAGGTGGAAGAGAAACAAGCATGCTGGGTAACCTGCTCAAGTCGCTTTAGTTGGGCTTCACTTCCCCCAGCGGTGAAATGGGAGTGTAGGAATTAGAATACTCTGACATTGGAAAGGCCCAGTCATCTGTGGCACAGATGCCACGGGGCATGCTCGCCTCACCTTCGTTCTGCTAAGGCAGCTGCTTTAGGAATACTAGGTTAAATCTAGCAGAAGAGGAGCAAGCCTGGGAAAATTCCTTGGCCCAGGGCTGAGACTGATAGGAATAGACAGCCCTGCTGGGGGAGCTGTGAGCCCTCGGGCATGTGGGCAACTGCAGACAGGAGACACCTGCACCAGGGGCCTTTCACGGAGAGACCACCACCTGCATGGACTCCTTTAGGTATCTGTCACCACCAAGTGTGTCAACTTTGAGCAGAGACTCAACAACCTTAGAGTTAAAGAGACCGTAGGTCACTGTGTCATTTTAGCTGCAGCATCTTGTTTTCAAATGAAAACTTGCATGGCCTCAACATTTAAACCACATATAGGTAGAGCCCTGGTGGGAGATTCAGGAATGGGGCACCTGGATCTCTGCCCTTGTAGCTTCCCCAACACTCCTTATTGAGGCCTCTGTAGATCTAAGGACCCCTGCTCTAGCTCCTCTTCGCAGATGAGAGAAGTGAGGCCCAGAGAGGGTGAGTGACTTGCCCCAGTGCACATAGCCAGTGCCCTAGTCCCCTGCTCCTACTTTTCATTATTCCAGGAGTCAGCTGTGAAGATTTTCTTGTTGCTATAAGTACATTTGCTTTTTAATGTCAGTGATGACTCTGATGGAGGGGTGGATAGGACAAAGGACAGTGCTTCAACAGAAACACCAAAAATCTTTTATTTCCAGAGCTTTAATTTTTATCTTTGTCCATAG
Seq C2 exon
GAGCTGGATTATTCTGTCAATCCAGAATCTCTGCCTCCACTTCGGAATCCTGACATCCTCGTGGGCGAGAATGACCTCACGGCTCTCAGCTATCTTCACGAGCCCGCGGTGCTCCACAACCTCAGAATCCGCTTTGCAGAATCCAAACTCATTTACACCTACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833:ENST00000261839:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):

C1:
PF0273614=Myosin_N=WD(100=75.7)
A:
NA
C2:
PF0006316=Myosin_head=PU(22.8=58.9)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development