GgaINT0029538 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:10112625-10115648:+
Coord C1 exon
chr10:10112625-10112714
Coord A exon
chr10:10112715-10115497
Coord C2 exon
chr10:10115498-10115648
Length
2783 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
GTGTTTACAATGTAACATAGGAA
3' ss Score
4.57
Exon sequences
Seq C1 exon
GAAAACTCAGAAGATTTTGAGATGTTGTCTTTTTGGCTTTCCAATACATACTATTTCCTTAACTGTTTGAAGCAGTACAGTGGGGAAGAG
Seq A exon
GTAGGAGTGATTTCATCAGATAATTTCATTGCTTTACCTTTGGCAGACTCCAATAAGGAAAATGGACAGAGATAGACAATAGGTAATTATTTTACCAGCTCACCGTTCCTTCAGGATGCGTATTGCTTTGCAGTGGTGACATGTTTTACACATATAAGAAGACAGTATAGAACAACTGATAAAGTGAAATCAAAGCATGAAAGTGCTGAAGTCAGTTGAAGACAATATGATAACTATTAAGTAATCTGAATTCTCGTACATGAGTTTAACGTGAGCTGGACTTGCTTGTTTAAGCTAGTTTCATCCTGAAATCCAACGTTCTTTTAAATTGCAAACTCTTACTCTATGGTATTTTATTGATGTGTTTTATTAACTTATATAGGCCAAATGAAATTGAATGAATATACTCTTCAGGATTAAAGCAAATAGAACTTGCAATTACAGTACCTGTGCACAGTCTAAACAGCAGCACTCCCCCTCGTGGTTCTATTGATAACATGTAATGCACAGTGAAAACAATATTTAAATGTAAGAATAACAGTCTTTTGTAATTCAACACTAACAAGAGGGAAAAGCCTGAATCCAGTACTTTGAGTGTTAACCTGCCTTTGAAATGAACACTTAAGACTTCATGTAAGTCAGGATCCAGTCCATGTTTTTGAAAGCTGAATTCTCCTGATGAAAAGTCAATATAATAGGTATTGAAAATAGTGTTTAAACATTTTTGTTTGTTTGTTTTTAATTAAATAGTTTACATTTTCTGTTTAAGTATTCTTGGACTTGCTCCAAAATCCACTGAAATATGTGCAAGCCTTTCTTTTGGCTTTAGTAAGCTTTTGGAACAGGATAAGCTTAAACACTGACTGGAAAACAAGTGGAGGAAGCCCAGAACTAGAAGCATCCATTGAAGTCAGCGGATGCTTTGACTCATTCTGAAACTGTTTGGCCAGAGACAGAGCTCTCTGTATATTCTAATATATACATTAGTATATAATACCAGTTCACAAGTATAATGTATATATGATCTCTAATATTTGTGTTTACAATGTAACATAGGAATTTATGAAGTACAACACCCCTCATCAGAATAAGAACTGCTTGAAGCATTTTGATCTCTCGGAGTACAGACAGGTTCTCAGTGATTTGGCCATTCGGATCTATCACCAGTTCATTCTTGTAATGGAGAACAACATTCAGCACATGGTCGGTAAGACAGCAGAAGTCCAATCAGAGACAAATGTAGCTGGTGAAGAACTTGTATAAAGCCTATGCATGGTGGCAAAGGACGGAGCTGACTTCTTCCTCCTGTAGATTTATACATGAGTACCTGCATGCATGTTTCTGCACCTTCAAATGTGAATGTTATATCCCCAAAGGGCTTTTTCCTTCCAACACTTTCCTTGTGTGGGATAATACTTTGAAAGAGACCAAAATTCTACAAAAATAGAAGTTACTTTTTCAAATTTGTGTGCNNNNNNNNNNCAGCTTGCACATTACAGGTGCTATTTGTTCCTTCTTCTGTAGATAGGTGGTATTATTGCTAATTCTGTGATTTTCAGCTTCAGTTTTGAAATGAAATTAACTTCATGAGACAAAGCCAATATAAGATTGCTTTATCATTTTCAGGAAAACTCAGAAGATTTTGAGATGTTGTCTTTTTGGCTTTCCAATACATACTATTTCCTTAACTGTTTGAAGCAGTACAGTGGGGAAGAGGTAGGAGTGATTTCATCAGATAATTTCATTGCTTTACCTTTGGCAGACTCCAATAAGGAAAATGGACAGAGATAGACAATAGGTAATTATTTGCCAGCTCACCGTTCCTTCAGGATGCGTATTGCTTTGCAGTGGTGACATGTTTTACACATATAAGAAGACAGTATAGAACTAACTGATAAAGTGAAATCAAAGCATGAAAGTGCTGAAGTCAGTTGAAGACAATGTGATAACTGTTAAGTAATCTGAATTCTTGTACATGAGTTTAACGTGAGCCGGACTTGCTTGTTTAAGCTAGTTTCATCCTGAAATCCAACGTTCTTTTAAATTGCAAACTCTTACTATATGGTATTTTATTGATGTGTTTTATTAATTTATATAGGCCAAATGAAATTGAATGAGTACGTAAGAATACACTCTTCAGGATTAAAGCAAATAGAACTTGCAATTACAGTACCTGTGCACAGTTTAAACAGCAGTACTCCCCCTCGTGGTTCTATTGATAACATGTAATGCACAGTGAAAACAATATTTAAATGTAAGAAATAACAGTCTTTTGTACTTCAACACTAACAAGAGGGAAAAGCCTGAATCCAGTACTTTGAGTGTTAACCTGCCTTTGAAATGAACACTTAAGACTTCATGTAAGTCAGGATCCAGTCTATGTTTTTGAAAGCTGAATTCTCCTGATGAAAAGTCAATATAATAGGTATTGAAAATAGTGTTTAAACATTTTTGTTTGTTTGTTTTTAATTAAATAGTTTACATTTTCTGTTTAAGTATTCTTGGACTTGCTCCAAAATCCACTGAAATATGTGCAAGCCTTTCTTTTGGCTTTAGTAAGCTTTTGGAACAGGATAAGCTTAAACACTGACTGGAAAACAAGTGGAGGAAGCCCAGAACTAGAAGCATCCATTGAAGTCAGCGGATGCTTTGACTCATTCTGAAACTGTTTGGCCAGAGACAGAGCTCTCTGTATATTCTAATATATACATTAGTATACAATACCAGTTCACAAGTATAATGTATATATGATCTCTAATATTTGTGTTTACAATGTAACATAG
Seq C2 exon
GAATTTATGAAGTACAACACCCCTCATCAGAATAAGAACTGCTTGAAGCATTTTGATCTCTCGGAGTACAGACAGGTTCTCAGTGATTTGGCCATTCGGATCTATCACCAGTTCATTCTTGTAATGGAGAACAACATTCAGCACATGGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023524:ENSGALT00000039054:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]