Special

DreINT0100869 @ danRer10

Intron Retention

Gene
Description
myosin VAb [Source:ZFIN;Acc:ZDB-GENE-050411-72]
Coordinates
chr25:7441648-7443434:-
Coord C1 exon
chr25:7443348-7443434
Coord A exon
chr25:7441799-7443347
Coord C2 exon
chr25:7441648-7441798
Length
1549 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TTTCTTCCTGACACCTTCAGGGA
3' ss Score
8.45
Exon sequences
Seq C1 exon
AAACGTGGAGATTTTGAGAGCATTTCATTCTGGCTGGCGAACACCTGTCGCTTCCTGCATTGCCTGAAGCAGTACAGTGGAGAAGAG
Seq A exon
GTAAGGTTGTTTTAAATACTAGTGTGTTGTCTACCTAAAAAACAATACTATAATACTCTTGGCATTTATAAGCAGTGCTGGGCAAAATAACTTACAATCTGTACTTTGTAAATAGGATTGATAAATTACAAAGAGTGTAATGTTGTTGTAGTAATGTAATAGTTAGAAATGGAATCTATTTTATTGTAAAATCTTGGATTAAATTTGACTTTTACATGTGTCTATATATCAAGTCAAGTGGAGCTATATTGTCATTCTGCTATATGTGTGGACATATCAGAGGAACGATATCGTGTCTCGCAGGACACAGGTGCTACATAAATTAATCATAAATACAAACACAACACTGGACATTGTGTTGCATAACTAACATAAACTATAAGATACTTAACTATACACATTAGACAGGCTATGCAAGTGCTTTTACATGAGACTGAACAATGCTGTGCAGGATATTGTGCAAGAGAGGTATAAAAGGTGAATATTGTGCAAAAGAGGTATTTAAGGTTTAATATTGTAAAAGAGTTATACCTATATTACTTTTAAGAATTTATAGTCATCTTTTTGAGTGTTTTTATTTTTTTTTTTGTAGTTTTTGCGAACTACTGATAACATTTCTTCCTAATTAAAATTATAAATGTTGTTTTTCACTTATTTGCAAATAGTTTATATTCATTTCTGATGTTACTGTGACCAGATTTGTGGAAAGCATCACTCTGGTATGACTATTATTATTATTATTATTATTATTATTATTATGAGCCTTTTTTACGATGTAAAATAAAGTGTATTAGACCTTTTTTTCAAAGATTACTCTACCAATACATAATAATTTCAGTGAAATCTCTTATCTTTCCATAGCTGTAAAAATAATTTTTTTTATTATTTAAGAAATGTAAATAAAAAGCTGTTTTAGTTTTTGAACAATAAGTATCCAGTAGTGCTTTTGGATTATAAGAGCGTTTTTTTTTTTTTTTTTTTTTTGTGCTCGGTACATATTTTTGTCTATTTAAATTTATGCTTTAACCATCACATTTCAATTACGTAATAAAACAGTTTTGTATGCCCAGTTTTTAATGTTATCTGACAACAATATTTAAAAATATGAATCCTTCAAAAATGGAAAAATTTATATCAAAAGTAAAACCTTAAAAACTGTTTTAGATTTTATTCTTATGCAGTATTTATTGCTATTGTGTATGTTGTATTAATGCTTTTTTTTTTTTTTTTTTTTTAAACTATTGTAGAAAGTATTTTTTTTTTTAAATGTTGTAAATTTGATCTGGTTTTCAATTAAATGGCCAGAGATGCTGATATGGCAATAAATTCAAAACTCTCTCTCTCTACTTAATATACATTTAACTAAAGTTAAACCATGTTCTATAACATAAAGACTAATGAAGCAAAAACAATGGAGCAAAAATTTTATGAGTAGAAAGCAAACAGTGTGCATGTGTAGTTTATGTGTTATTATTAATAATGTATTTAATGAATTATTTATGTGCATAAATGCTCACCTATTGTCATTATTTCTTCCTGACACCTTCAG
Seq C2 exon
GGATATTCAAAGCACAACACCCCTCGGCAAAATGAACACTGCCTGACAAACTTTGACCTGTCTGAGTACCGGCAGGTTTTGAGTGATCTGGCCATTCAGATCTACCAGCAGCTCATCCGCGTCATAGAAAACATCTTACAACCTATGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074622:ENSDART00000089034:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.176
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGTGGAGATTTTGAGAGCA
R:
CGATCATAGGTTGTAAGATGTTTTCT
Band lengths:
238-1787
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]