RnoINT0097321 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82237823-82238850:+
Coord C1 exon
chr8:82237823-82237912
Coord A exon
chr8:82237913-82238699
Coord C2 exon
chr8:82238700-82238850
Length
787 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TGTACTCACATTACTTTCAGGAA
3' ss Score
8.98
Exon sequences
Seq C1 exon
GAACACTTTGAAGATTTGGAGATGCTGTCCTTCTGGCTTTCCAACACTTGTCATTTTCTCAACTGCCTGAAGCAGTACAGTGGAGAAGAG
Seq A exon
GTAGGAAGATGCCTGTCCCGCTGACGGCACCTGGGGCCACCTCACAATCTGGCCCACAGAGGCACACAGTGGTTACCACGATGTTCTGCTCCCCGCTCCACAGTCTCCAGGCCAGTTAGCTTGCTGGCCTCCTCTTCACCCAGGAGGCCAATCTTCCTATCACCTGTTATGTGTCTAGAGGTTTCTACATGCCGAAGACTCCCAGAAGTTCAGACCTTGGCCTTAGTCTAAGGCTTTGATCGATAAGTTTTCAAATCCTCTGGAGATGAGATAGCCTTGTTTCCTCCCGAAGGGGACAATCTGTGAATTTCAACATGATGACCCAAAATGTAACCTCTGGTTTAGCTTGCTAACTGTTCTCTCTAGAGGACTCTATCTTCCCATGACCCATAAGTAGATGACACCTGTACCCCAACTGTCTAGGCACTGATATCATGAAGGAATTCTTTAAGCTTCACAGGGGGAATTTTTCATTGAATTAGAACAACAAAGTGGCTTCTAGGGTGGTTTTATTCCGCCTGAGAAGCCAGAGCAAACATTTGGTGTCTTCCTCTGAAGCACCTGCTCCATGGGCCGGGTTGTGGTCCCGGGTGTGACTGATTAAGATTATACAATAAATTGCTATCTTCTGTCATGCTAAACAAACTAGTGCTCGTTTAAAAACAGGCATTAAGCGTCAAGCAGCAGAATTACCCTAGATGCTGATGGTAACATCTTTAGTACAGGCAGAATTTCAGTCTCCCTCCTGCCCACAGCACTCTGATGTTTGTACTCACATTACTTTCAG
Seq C2 exon
GAATTCATGAAGTGTAACAGCCCACAGCAGAATAAGAACTGCTTGAACAATTTTGATCTTACAGAATACAGACAGATTCTGAGTGATGTGGCTATACGAATTTACCATCAGTTCATCCTCGTGATGGAAAACAATCTCCAGCCGATAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACTTTGAAGATTTGGAGATGCT
R:
TTATCGGCTGGAGATTGTTTTCCA
Band lengths:
238-1025
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]