MmuINT0104497 @ mm9
Intron Retention
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75142969-75143967:+
Coord C1 exon
chr9:75142969-75143058
Coord A exon
chr9:75143059-75143816
Coord C2 exon
chr9:75143817-75143967
Length
758 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
TGTGCTCCAATTACTTCCAGGAA
3' ss Score
8.54
Exon sequences
Seq C1 exon
GAACATTTTGAAGATTTGGAGATGCTGTCCTTCTGGCTTTCCAACACTTGCCATTTTCTTAACTGCCTGAAGCAGTACAGCGGAGAAGAG
Seq A exon
GTAGGGAGCATGTCTGTCCTGCTGATGGCCTCCTGGGACCACCTCCTGATCTGGCTCACCGAGGCACACAGTGGCTACCATGATGCTCTGCTCCCACTCCTCACAGCCTCTATGCCAGCTAGCTTGCTGGCCTCTTCACCCAGGAGGCCAATCTGCCTATCACCTGTTAGGTGCCTAAATGTTACTACATGCTAGAGACTCCAAGAAGTTCAGGCCTTGGTCTTAGTATAAGGTTTTGATCAATAAGCTTTCAGATCCTCAGGAGATGAGATCGCCTTTTTTCCTCCTGAAGGGGACATTCTGTGGATTTCAGTATGATGAAACAAAATGTAACCCCTGGTTCATCATGCTAACTGTTCTCTCTAAAGGACTCTATTCTCCCACGACCCATAAGTCGATGACGCCTGCACTCCAACCCTCTAGGAACTGATATCATAAAGGTGTTCTTTAAGCTTCACAAGGGGTATTTTTCATTGAATTGGAGTAACCAAGTGGCTTTTAGGGTGTTTTATGCCACATGAGAAGCCAGGGCAAATACTGGGTGTCTTCCTCTGTAGCTCCTGCTCCAGGGACAGTGTTGTGACTCTAGGTGTGACTGACTAAGATCATACAATAAATCGCTATCATTTAAAAGCAAACACTAAGTTTTAAGTTGTGGCATTACCCTAGATGCTGATTATAGCATCTTTAGTATAGACAGTATCTCAGTTTCCTTCCTGCCCACAGCACTCTGATGTTTGTGCTCCAATTACTTCCAG
Seq C2 exon
GAATTCATGAAGTATAACAGCCCACAGCAGAATAAGAACTGCTTGAACAATTTTGATCTTACAGAATACAGACAGATTCTCAGTGATGTGGCCATACGGATTTATCATCAGTTCATCATTGTGATGGAAAACAACCTCCAGCCGATAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590-Myo5c:NM_001081322:36
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACATTTTGAAGATTTGGAGATGCT
R:
TTATCGGCTGGAGGTTGTTTTCC
Band lengths:
238-996
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: