GgaINT1018721 @ galGal4
Intron Retention
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8325741-8326681:+
Coord C1 exon
chr10:8325741-8325830
Coord A exon
chr10:8325831-8326530
Coord C2 exon
chr10:8326531-8326681
Length
700 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CTGTGATTTTATTAATGCAGGGG
3' ss Score
6.17
Exon sequences
Seq C1 exon
AAAAGAGGTGATGACTTCGAAACGGTGTCTTTCTGGCTGTCCAACACCTGCCGGTTTTTGCACTGTTTGAAGCAGTACAGCGGAGAAGAG
Seq A exon
GTAAGCAGTGCTCACAGTCCAGTTTCTTTGCTCTGTAATACCACTGACAGCACTACACTTTACTTCCTGTAATAGCTCCAAGTCTATTCAAAGTCTCTTAAAGCAGCCACACTTTCTGGAATGATGGTGATGACATCAGTGGAAAGTATTAGGAGATAAAGTCTCATCCCATTTCACTTTATTGCAGGCTGAGGCCCCAAACGTTAGATAACATTGTACTCCTGAAAGTGCCAGCTCAGGTTAAGTTGAAGAATCTGTTGCTATTACAATTTTTGGTAACAATTCGCTGGAATTAAACAGGCCATGTTAAATGCTTTAACTATAGTATGACAGACTGTTTTAAGTTTGGAGGCTACCATGTGTCGAATTCCTTCTTCAGACTTACCTGTGATTTTGGCGATAAATGGCTAGATGATAATGTCCATGTTGGAGTGGGAGGGCAGAAAGCTAGAAAGCTGGCACTTTGTTCCTACGTCACATACTCAAAGTTTCAAGTCAAGGAAGCAGAGACTGCGTAAGTCAGAAATGAAAATCAAATCCTAGTATTAGATGCAATCAGAACTTCCAAACTAATGTTTTGAGAGGTTGTAGCCATTACTTTGAAGTATTTGTCAGTTGTGTTAAAAAATCTTAATACTGGTTTTATTTGATATTCTTGTATTCCACTGAAGCAATTGTTTCTGTGATTTTATTAATGCAG
Seq C2 exon
GGGTTTATGAAGCATAATACACCTCGTCAGAATGAGCACTGCCTCACTAATTTTGACTTAGCTGAATACAGACAAGTCCTGAGTGACTTGGCTATTCAGATCTACCAGCAACTGGTCCGCGTGTTGGAGAACATTCTGCAACCCATGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGTGATGACTTCGAAACGG
R:
CAATCATGGGTTGCAGAATGT
Band lengths:
238-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]