BtaINT0098174 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006489 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58144291-58146102:+
Coord C1 exon
chr10:58144291-58144380
Coord A exon
chr10:58144381-58145951
Coord C2 exon
chr10:58145952-58146102
Length
1571 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
ACTCTGCATTATGGCTCTAGGGC
3' ss Score
6.94
Exon sequences
Seq C1 exon
AAAAGAGGTGATGATTTTGAAACCGTCTCCTTTTGGCTTTCTAACACATGCCGATTTTTGCACTGTTTAAAGCAGTACAGTGGAGAAGAG
Seq A exon
GTGAGAAAACCTTGATTACAAAACAGCATGCTATACTTTATCCGAACTTTTTAAGGAAAAAATTTAAAGCACAAAATGTTTAGTCATTTGTTAATTTAGAAACCTGAATTCAGAAGTGGCTTAACAGTTTATAGCTCTATTTGACATTCATTATTTATGAAACTGACTTGGGAAGTGGCATAGTTTCTTCGCTCTGCGAGTTTGTATTATGAGAAAGCACAGCAAAAATAAAATGAGCATTGGTCATTGAATAGTTATCGCACTGAAACTTTTTGGTAAGACGTGAAAATGGGATTTTCAAGGATTGATATATGGAGCTGTTTAAAGAAATGAATCCATTATAGCTTTCTATAATACATTAAAAATGATCATGTTAAAAGATATCTCAATATTTTTCCAAAAATATGTTTTGCTTTTGCTTATAGTGATGTGTTCATCAGTTAGTTGATAGACTTCCTATTTCAAAACTACATATATATAATTATTATTTGTTAATGGCTACATAGTATATATGAGACAGCACTCACTTATATTATGTTGTTTAATTCTTACTTCTCTTTGAGGTTGTAATTCTAACCCAGTTTTACAGATGAGGAAACTAAGGCTCAAAGCAGTTCATCACTTTGCCCACATCCTCTCAGCCATAAGGAGCTGAGCTAGGATTTTGGGTCTGCCCACCTTCAAGAGCTTGTGCCCATAAATGCTGCCCTTCATGCCTCCCCATCCTTTGCTGTCAGGACAGGCAGAGAAGCTGAGCAGTGGCCACTTTCTGAGCACTCACAGGCTTGGAGCAGAAGAATGTCCTGGCAAATGATGGGAAATACAGTATGAATAAGATATGGCCCCTGAGCAGGCGGGACAGACAGACCAGAATCCCCCCGAGGGCCTGTTAAGTCCCCAGTTCTAGACCAGGTTGTCAAGTAAGTTGTAGAGAGGCAGATGCTTGAGTGTGGCCAGAATCCGTCAAGTAGGCAAAAGTACCTGCCTATACAGTTGGCTTTCCGTGTTACCACATACCATCAAAAGATTCCGTTCTAAGCTTGGACTGAGAAGCCTGTATGAATACCATAAAATATAATAAAGGAAGATTTTTTATTTATTCACCCGTCTCTGTAGAAATGACCAATTATAAGAAAATTATGTATGTCTTTCAGGTACAGAATTTATAAGTAAGACTCTATTTAATGAACTGAAGTTAAGAGATTGGTATTTTACATAATTCAGTGTTTGGCAGTAAACCAGCTGTTTCATAAGTGAAAACACTCATTAATTTTTTTTTCAAATTGAGTTCCCCTATCTTGTTTCATTGACATTGCTGGTGGAAAGGCTTAAATGCTAGACTGCCAAGTTTAGATATTATTCAAATGCTAGTAAGAAGTGGAAGCAGGGATGTGATAGAAACAAACACACAGAATTTGGGAAGGATTATCCTGGCACTTATGTGGAAGTTGGATGGGAACTCTTAGGAGAAAGGTAAAAAAGAGCATGAGGATGTTGATCAAATGAGAGAGTTAAACAGACAGGAGACATTTTATTTCATGAATGTCATTAACTCTGCATTATGGCTCTAG
Seq C2 exon
GGCTTTATGAAACACAACACCTCTCGCCAGAATGAACACTGCCTCACCAATTTTGACTTGGCTGAGTACCGGCAGGTGCTCAGTGACTTGGCAATTCAGATCTACCAGCAGCTCGTGAGGGTGTTAGAGAACATCCTTCAGCCAATGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489:ENSBTAT00000008516:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGTGATGATTTTGAAACCGTCT
R:
CGATCATTGGCTGAAGGATGT
Band lengths:
238-1809
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development