DreINT0100845 @ danRer10
Intron Retention
Gene
ENSDARG00000061635 | myo5aa
Description
myosin VAa [Source:ZFIN;Acc:ZDB-GENE-041027-2]
Coordinates
chr18:39054397-39055659:+
Coord C1 exon
chr18:39054397-39054486
Coord A exon
chr18:39054487-39055508
Coord C2 exon
chr18:39055509-39055659
Length
1022 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TGCTCTCCTTATTTCTCTAGCAA
3' ss Score
7.82
Exon sequences
Seq C1 exon
AAACGAGGTGATGACTTTGAGACTGTTTCCTTCTGGTTGGCCAACACATGTCGTTTTCTGCACTGCCTGAAACAGTACAGTGGTGATGAG
Seq A exon
GTGAGAAATCACACACCATCACAAGAATATGTGAAGTTTATTCATAAACTAATTTCTAGTAGATCACATGTTTATGATTGACCTCAGCTGGTCCTGTGTTAGCTAACCACATGATTTACCAATCAGATGAATCCTAACACACTATAAATGACCAGAGTTTCCTACCTTAGTTATCTTCCACCCTATTCCTCCTCCCTTTCCCTTGATAGGGAGGCATGGTGGCTCAGTGGTTAGCACTGTTGTCTTACAGCAAGAACGTCACTGGTTCAAGTCCTTACTAGGCCAGTCTGTGTTTCTGTGAGGAGTTTACATGTGCTCACATGGGTTTTCCCTGGGTTCTGCCGTTTCCTCCAACACTCCAAAGACGTGACATAAGTGAATTGACTAAACCAATTTGACACCATAGATGAGCTCCTACTTATGCCTTTCAGTCAGCAGTTTATATCTCCCTATAATCTCTCTTAGGTTCTACATAAACCAGGGGAGTTCTCAAGACCTGCCTGAGCTCAATCCTCGCTTTTACTTGATTAAAGTGCAGTAGCTGATATGTAATATTTCATTCACAAATGGACTTTTCAACTCATCGTGTCTATGATTATCCTCCGTCTTCAGTAGTGCTGTTTTTTTTTCGATTTTTTTTTTCTAACTGGAAGACAAAAAAATATTGAAGTTGAATCCTGACATCTAGTGGACAAACTAAGTAGTGCAAAAATGATTCATAGCCCACATGCGAGCTGCTCATACATTGTATGCATGTTTAGAAAAAAAATCTGACGACAGTATGAGGGTTTAAGAATAATCTTTTGTTGATTTACTTACAGGTCACATTTAAAATGTAACTTGTCTCCAATCCTCCCCAATCTGATTTCAGTCCATAGCTCATTCATTTAAGTGTCATATTGGTCATTTTGATAACCAATTTGAGCGTTTTCATCTCAACCTAATGGAAATGTATTGGAAAAATCTTATTAATTCAACGTTCAAATGGCACTATTAACCCATTGCTCTCCTTATTTCTCTAG
Seq C2 exon
CAATTCATGAAGCATAATAGCCCAAAGCAGAACGAACACTGTCTCTCTAACTTTGACCTGGCAGAGTACCGGCAGGTTCTGAGCGATCTGGCCATTCAGATCTACCAGCAGCTCATCAAGTGTATGGAAAACATCCTGCAGCCCATGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061635:ENSDART00000133618:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.052
Domain overlap (PFAM):
C1:
PF058146=DUF843=PD(13.0=23.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGGTGATGACTTTGAGACTG
R:
GATCATGGGCTGCAGGATGTT
Band lengths:
238-1260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]