GgaINT0029973 @ galGal3
Intron Retention
Gene
ENSGALG00000004624 | MYO5A_CHICK
Description
NA
Coordinates
chr10:10075203-10076143:+
Coord C1 exon
chr10:10075203-10075292
Coord A exon
chr10:10075293-10075992
Coord C2 exon
chr10:10075993-10076143
Length
700 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CTGTGATTTTATTAATGCAGGGG
3' ss Score
6.17
Exon sequences
Seq C1 exon
AAAAGAGGTGATGACTTCGAAACGGTGTCTTTCTGGCTGTCCAACACCTGCCGGTTTTTGCACTGTTTGAAGCAGTACAGCGGAGAAGAG
Seq A exon
GTAAGCAGTGCTCACAGTCCAGTTTCTTTGCTCTGTAATACCACTGACAGCACTACACTTTACTTCCTGTAATAGCTCCAAGTCTATTCAAAGTCTCTTAAAGCAGCCACACTTTCTGGAATGATGGTGATGACATCAGTGGAAAGTATTAGGAGATAAAGTCTCATCCCATTTCACTTTATTGCAGGCTGAGGCCCCAAACGTTAGATAACATTGTACTCCTGAAAGTGCCAGCTCAGGTTAAGTTGAAGAATCTGTTGCTATTACAATTTTTGGTAACAATTCGCTGGAATTAAACAGGCCATGTTAAATGCTTTAACTATAGTATGACAGACTGTTTTAAGTTTGGAGGCTACCATGTGTCGAATTCCTTCTTCAGACTTACCTGTGATTTTGGCGATAAATGGCTAGATGATAATGTCCATGTTGGAGTGGGAGGGCAGAAAGCTAGAAAGCTGGCACTTTGTTCCTACGTCACATACTCAAAGTTTCAAGTCAAGGAAGCAGAGACTGCGTAAGTCAGAAATGAAAATCAAATCCTAGTATTAGATGCAATCAGAACTTCCAAACTAATGTTTTGAGAGGTTGTAGCCATTACTTTGAAGTATTTGTCAGTTGTGTTAAAAAATCTTAATACTGGTTTTATTTGATATTCTTGTATTCCACTGAAGCAATTGTTTCTGTGATTTTATTAATGCAG
Seq C2 exon
GGGTTTATGAAGCATAATACACCTCGTCAGAATGAGCACTGCCTCACTAATTTTGACTTAGCTGAATACAGACAAGTCCTGAGTGACTTGGCTATTCAGATCTACCAGCAACTGGTCCGCGTGTTGGAGAACATTCTGCAACCCATGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGTGATGACTTCGAAACGG
R:
CAATCATGGGTTGCAGAATGT
Band lengths:
238-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]