MmuINT0104457 @ mm9
Intron Retention
Gene
ENSMUSG00000025885 | Myo5b
Description
myosin VB [Source:MGI Symbol;Acc:MGI:106598]
Coordinates
chr18:74901780-74904425:+
Coord C1 exon
chr18:74901780-74901869
Coord A exon
chr18:74901870-74904274
Coord C2 exon
chr18:74904275-74904425
Length
2405 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CGCACGCCTTTCCTCTTCAGGGT
3' ss Score
10.24
Exon sequences
Seq C1 exon
AAGCACAATGATGACTTTGAGATGACGTCATTCTGGCTATCCAACACCTGCCGCTTCCTTCACTGTCTGAAGCAATACAGTGGTGATGAG
Seq A exon
GTGAGGAGTGGGCAGAGCGCCCCAAAGTGGGTCCCATTTCATCTACTTGCAGTTTGGGGTGCTATGGATCCCCCTTAGATGATGAGTATAATAAGATCTGTGAGGTACCTGCTGGAACCTCAGATTGTGGGAATGCCTTTCTTTGCAAGACTGGGTTGGGGCGCAGGTGAGTCTGGGCTTCAGTGGGCTCGAGAACTCTGAAAAAAAAATCAAGAGATAGAACAGGTATGAAATGAGTTCATTTAACCACACAGAGCCAGAGAGCCCCTAGACCTCCTTAGGGTACCCTTGGGACGTCGTATCTCTAAAGCTGTCCCAGAAGAGTCCTATCAGTGAAGACTGGGAGAAAGGTCAAGTATCTGGTATATCCAGCTGTCGCTTGGGCTCTGTACACTTCAGAATAAAGATGCCACCAGAAGAGACGTACCCCTAGACCCAATCACATGGCACAAACTGATGTCGAGGGCCAGCTTCTCGCTTCCAGCTTAATTTGATTCAATGACCTGAAGCTGTCATTTCATGTTCCACTCTGGACCTTTTCAGTCCAGCTTATCTAGAACTCGAATTCCTCTCATTGGGGGCATTACCACCTGCCATGCTGCAGCACGGTATCTTCAGCTTCATGGAGTACGGTACACAGTCCAGTTTCCCCAGAGCCTTCTGCCTCCCACATCCCCACGAGGTCTCGACTCCTCACTCTCCCAGGTGTTGACACATCTCACCCTGCCCAAAGTCAAGGAGTAGCAAAAGTTAAAACAGTGCAACAGCATGTTAAAGTTTTATTCTATCTCTTGTGCCATATAAAATAGGAACGCTCTCCTCCTGAGCGTAATGGACTAATCTCCACCCCGTCAGTCATTTTTGGAATGTGGCTTGACCCTACCTCCCTTTAAGAATTAGAACTTGAGTTCAGGCACTTGCTTTTACTATGGAAGGGATGGTAAAGGTGGAAGACACGCCCGTGGTATCAGACTGGATGCCTTCTGTTCCCTGGGAGCACTTTCTGGCATTTCCTTAAAGTCCCTGCTTTACAAAATGTCTTAGTTTCATTTGTGACAAAATGCCCTGACAAAAACTTAATTGAGATAGGATTTACTTGGCTCACAGATCCTGACCGTCTGTTGTAAGAAATCAAGGCAGCAGAAAGTTGAAGCTAGTCACCTTGTACCCACATGGAGAAGCAGAGAGCAAGGGATAAATGCAGGCCCGTAGTACTTGGCGCTCTCTCTCCTTTTCATCGGTCCCGGGTCCAGCCATTGGAATGGTGTAGTCCATATTCAGGGTGTGTCTTCTCACTTGTCTGCCAGATGGTCCTAGACCCTTGTCAGACTGACATTAGCTCTAAGCACTGTTACTAGCTACTATGTATTCCAACAGTGTTATAGAAGGGCCAGACCATGGGCTCCATGACCCCGATCTGCTCCTTATGCTTCTGTTCTTGGGGACAAGATTTGAACCACATTGTAACTGACTCTGTGTAGTCTTAAGCAGCAAGGAGCAGCGAAGGACCCCATCTCTTAGCAGTCGCCGCAGTCCCTCCTGCTTCCGTCCATTTTCATATTAAAAATTGCTCTGTAATTTGAGAAGGGCCACAGGTTAAGGAATGGCTGCCTCTTTGACAGTACTGATCTTTTTGGTTGCTGTTAATCCCTCTTGGCCTGAATAAAAAGAACCTCGGAGCTAGGCTCAGGGGCGCATGCCTTCAACCCCAGCAGTTGGTAGGAATAGCCCAAGTTTGAGAACAGCCTAAATGATGCAGCAAGATCAACTCAAAATAAAAAAAAGATAAAAATAAAGAAACCTTGGCTACAGGCATCCTTGTGATGTTAGTACTTGGTCCAGATTACATGTTCATCCTAGTACAGCCGGCTAAGAGGATAGTGCCCTCCCTACCATTTCTGCCCATCCATTGACTGATAAAATGACAAGAGGCTGTAGATGTCTCCTCCAAACAGAACCTGGCCTATGTCATATTCCTGTAAGGTCCTGTGTCGCCTAAGATTTTAGGGAAATCTGAATGCAGATAACACCAGAGCTTGAATCCCTCCATTTTTTTTTTAATTTGGGGTACTTAATATATAGAACTCACTTTATTTTGAGGATCCAAATGATTTAGGCATATATATGTGTGTGTGTGTGTATGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTAAATTGTCTGTCATGAGAGTTCCACTTCTTCAAGGTCCAGGACCATCCCAAAGGCCCCACGTTGTCTAGAGCATTACATGTGTAGGGAAGGCCTGAGTGTGGAGCCCTGCAAATAGAAAGTTGTTAAAGTGCCCAAGCCCAGGAGGTACACGGAGCCCGGGAGCCCCCAGAAGGTTATTCACGCACGCCTTTCCTCTTCAG
Seq C2 exon
GGTTTCATGACACAGAACACTGCGAAGCAGAATGAGCACTGTCTCAAGAACTTTGACCTCACTGAATACCGCCAGGTGCTAAGCGACCTTTCCATTCAGATCTATCAGCAGCTCATTAAAATCGCCGAGGGCTTGCTGCAGCCTATGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025885-Myo5b:NM_201600:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: