HsaINT0108821 @ hg19
Intron Retention
Gene
ENSG00000167306 | MYO5B
Description
myosin VB [Source:HGNC Symbol;Acc:7603]
Coordinates
chr18:47365514-47367824:-
Coord C1 exon
chr18:47367735-47367824
Coord A exon
chr18:47365665-47367734
Coord C2 exon
chr18:47365514-47365664
Length
2070 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GCACGCCTCTCCCTCTGCAGGGC
3' ss Score
10.74
Exon sequences
Seq C1 exon
AAGCACAATGATGACTTTGAGATGACGTCATTCTGGTTATCCAACACCTGCCGCCTTCTTCACTGTCTGAAGCAGTACAGCGGGGATGAG
Seq A exon
GTGAGTGGGGAGCCAGGCACCCAGGAGGCATTCCTGCTTCATCCAAATGTGGTTGAGAAGTGCTTTGTATACCCTCAGAGGTCAGTGGGGTCTTTGGAGCACCCTTGGGGACCTCAGACCGTGGGCACACCTTATCATGCCTCGTGGCTGGAAGCAGCAATAAGGCCAGCCACAGGAGACCTGCCTCTAGGAGGCCTTGATGAGCCCAAGGGGCCCCAAAAAGCACTCCTGGGTTATGTAAGTAGAGTCTGCATAACCCATGATCAATAGAGGCCCTGGGAGTCTCCATGAAACTCTTGTAACCTGACATTTCTGTATCAGCTCTAGAAGCCCCACTGCAGTGGATACTGGCAGGGAGCTCAGTTGCCTAGTGGGTCACCCTGTCTCCTAAGCCAACTGATTAATCTGTCCATTTCAAGATAGACAAAGATGGCCACAAGAACAGAGGCACACCATAATCAGAACTACGTGTGTGCAAACTGACCTGGAGGCCCAGCTCCATGCATTTATCCAAATTGGATTCCTTGACCTGAGGCCCAACTACTAACCCCATCACTTCACAATCCACACCGGACCTGTAAGGCCCAGCTTTTTCTGGAACTCACATTCCTAGCTTTGGTCCCTGAAAGAACTTCTCCCATGCTCTGCACTCTGCCCAATGACCTAGTAATATGTGGCTTGTTTCCATTCTAGTTTCTCTGGTGAGAATCCCAGCTTGTTCCAGATATGCCCGCTCACAGGTTCCTGTAGGTCTTCCAACTTTTCTTCCCCTTCCTTTCACATATCTCACCATCCACCCTTCCCAAGGTCAAGACATAGTGTAAACCAAAATAGTGCGACCATTTTTAAAGCTTTATTCCATCTTTTGTGCCAGAACCAATTTTGACAGACTCTTCTCCCTGGGTTAGTAAAAGGATATGCCCTTCCTTTCAGTCTTACCTTCTTTGCAGTTGGCTTGACGCCATCTCTCTCCTAAGAACCAGCACTTCATTTGATGGCCTGCTTTTATTATAAAAGAGATGGGCCAAAGGTTAAAGAAATAGCCATTTCAAACCCCATGACTTCTGTTACAAAATCATAATATCCAAGCATTTACTTGAAGCATAGAACTACATGTAATGTTATTTCATTGAGGTCCATCACTTTACCCAATGTTATACACATTCTAAATGGGAGGTTATATAAGGCTAGGGCAGGACCTAGAACTCCATTACATTAGGTTGTGGTTACATGTGCTCATATTCTCTGGGTCAAGAGCTGAACCACAGCATGACCAGATCCGTGTAGTCCAAATAACAAGGAAGAATGATTGACTCTATCTTCATCATTACAATTATCCCCTTTTCTGCCTGCTTTTTTTCATATTAAGATGGCTTTGTATTTGACACAGTACAACAGGCCTTGCTGAAGATGGTTGCCCTTTTGGGAGCACTAATCTTTTTGGCAGATACTGGTTTCCCTAGGCCTGAATGAAAAGGACATTGGTCACATGAGCCCTTCTGATATCAGCAGTTCCCTTAACTTACATGTGATTTCATCTGATTAATACAGAAAGCTAAGAGGACACAGTGCGGTAGCTATGAAATCACTTTAGTTCATCTATTAATTCTGATAACCAGTGATAGAATCTGTATAAAATTTCTCCTCATACAAGCGTATAATCTGGCCCATGGCCACACTCCTTTAGAGGCTGCACATCATCTAACATTTTAGGGGGACCTGATATATTGAGGAAAGCGCTGGATGAAGGGAAAAAGCAGGGATCCCTTTCTCTGGACCTGGTACCAACCTAGGTTTTGCTACCGTAGGGAAATCACTTCGCCTCAGGGATTTGGACTGAGCGATTCAGGCTTTCTCTCTCATGTTGAGTTTTTCTACATCCTTCAAGTTCAAGGGTCATCAATGAGGCCTCAAAGAACTGACAGGCTTTTGTAAAACATCATCTACATAGGGAGGGCCTGAGTAGGCCCCCTGCCCACCAAATAGATGACTAAAGTTACCAGAGCCCTGGAAGTTGTGCTGGGCCCAGCAGACCAGAGAACTCAGTAGTGCACGCCTCTCCCTCTGCAG
Seq C2 exon
GGCTTCATGACTCAGAACACTGCAAAGCAGAATGAACACTGTCTTAAGAATTTTGACCTCACCGAATACCGTCAGGTGCTGAGTGACCTTTCCATTCAGATCTACCAGCAGCTCATTAAAATTGCCGAGGGCGTGTTACAGCCGATGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167306-MYO5B:NM_001080467:35
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)