RnoINT0097281 @ rn6
Intron Retention
Gene
ENSRNOG00000014104 | Myo5b
Description
myosin Vb [Source:RGD Symbol;Acc:621347]
Coordinates
chr18:70713703-70716252:+
Coord C1 exon
chr18:70713703-70713792
Coord A exon
chr18:70713793-70716101
Coord C2 exon
chr18:70716102-70716252
Length
2309 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CACACACCTTTCCTCTTCAGGGT
3' ss Score
10.33
Exon sequences
Seq C1 exon
AAGCACAATGAGGACTTTGAGATGACGTCATTCTGGTTATCCAACACCTGCCGCCTCCTTCACTGTTTGAAGCAGTACAGTGGGGATGAG
Seq A exon
GTGAGGAGTGAGCAAAGCACCCCAAACTGGGACCCTGTTTTATCCATTTGCAGTTTGGGGTGCTATGGTCCCCCCCCCCCAGTGTTCGGTGTAAGGTCTGTGAGGCACCTGCTGGCACCTTCACTTGTGGGGATGCCTTTGCGGGACTGGGTGGGGCACAGGAGACTCTGAGCTTCCCTGGGCTCAAGAACCCTGAAAAATCAAGAGAAATTAGTTTAACTACACAGGGCCAGAAAGCCCCTTGACTCTCTAGGGGACCCTTGTGACGTCATAATTCTAAAGCTGTCCTAGAGCCATATCAGTGAAGACTGGGAGAAAGGTCAAATGTCTAGTGTATCCTGCTGTCTCTTGTGCTCTGTCCACTTCAGAATAAAGATGCCACCAGAAGAGATGTGTCCCCCCCCCCCCCGCCACATACAGAACCACATGGTACAAACTGATGTCAAGGCCCAGCTTCATGCTTGCAGCTCGATTTGACTCACTGACCTGAGGCTACCATTCCGTGTTCCACTCTGGACCTCTTCGGTCCAGCTTTATCTAGAACTCACATTCCTCTCACTGGCTGCCAAGTGGTTCCTTCAGCTTCATGGGATACAGCACACCGTCCAGTTTCCCCAGTGCCTTCTGCCTCTCACATCCCCACAAGGTCTCTGCTCCGTGCTGCTCTCCCAGCCATTCACACATCTCACCCTGCCCAAAGTCAAGTAGTAGCAAAACTTAAAACAGTGCAACAATGTTTTAAAGTTTTACTCGATCTTTGGTGCCATATAAAATAGGAAAACTCTCCTCCAAGGGTAATGAACTAATCCCACCTCAGTCAGTCATTTCTGGAATGTGGTTCTGATTCCCTTTCAGAATTAGAACTTGAGTTTGGGCACTCGCTTTCACTATGAAAGGGATGGTAAGGGTGGAAGAAATGAATGCCCTTTGTTTCAAACCTGGTGCCTTCTGTTCCTTACCCACAACGTCATCTACAAGCCCCCGTATGTGGGGGAGCTCTTTCTGGCACTTCATTAAGGTTCCTGCTTCAGTTTCATTTGTAACAAAGTGCCCTGACAGAATCTTAATCGACACAGGGTTTACTTGGCCCACAAATCCTGTTTACTGACCATCTGTTGTAAAAAATCAAGGCAGCAGAAACTGGAAGCTAGTCACGTTGTATCCACACAGAGAAGCAGAGAGCAAGAGATAAATGTGGCCCATGGTACTCAGCTCCTTCTCTCCTCCTCATTCAGTCCAGGGCCCGGCCATTGAAATGGTGGGGTTCAGGTGTGTCTTCTCACCAGAGGCCTGTCTGCCAGATGATTCTAGACTTTTGTCAGACTGACAATTAGTTGTAAGCACTGTTACCATGGATTCCACCAGTGTTATGAAAGGGCAAGACCAAGGGCTCCATGGCCCTGGTCTGCTCCTTGTGCTTCTGTTCTTGGGGACAAGATTTGAACCACAGTATAAACAGACTCTGTGTTGTCTAAACAGCAAGGAGTGAAGGACCCCTACCTCTTAGCAGTCGCAGTTGTCGCTCCTGCTTCCACCCATTTTCTTATTAAAAATGGCTTCGTGATTTGAGATAAGGGCCACAGGTTGAGGGATGGTGGCCTCTTCGACAGTACTGTGCTGCTAATCCCTCTTGGCCTGAATGAAAAGGACCTGGGAGCTAGGCTCAGTCGCACACACCTTCTTCAATCCCAGCAGTTGGGAGACCGTGGTAGGAATATCCCAAGTTTGATGACAGCCTAAGTGATCTGGCAAGAGCATCTCAAAACAAAATAGACAAAATTAGACTTCGGTCACAGGGTCCCTTGTGATGTTAGTACTTGTTCCAGATTAAATGGTCACCCTAGGACAGCAGGCTAAGACGACAGTGCCGTCCCTACCATTTCTGCCTGTCCATTAGCTGAAAAAATGACAAGAGCCTGTAGATGTCTCCTACAAACAGAACCTGGCCTGTGCCATACTCCTGTGTAACCCAAGATTATAGGGCGATCTGAAGACTGATAATTCCAGATAAACATCCAGAAAGCGTGAATCCCTCCTTCATTAATTTTTTTCTGACTGTGGGTACAGAATATATAGAACTCACTTTATTTTGAGGATCCAAATGATTTAGGCCCTTCTGTTTACATAATTCGTCTTGTCTGTCATAAGATTTCCACTACGTCCAAGATCCAGGGCTATCCCAAAGGCCTCATGGTTTCTAGAGCATAGGGAAGCCCTGCCAATAGGATGCTGTTAAATGCCCAAGTCCAGGAGGTATACGGAGTCCAGGAGACCCCAGAGGTTTATTGACACACACCTTTCCTCTTCAG
Seq C2 exon
GGTTTCATGACACAGAACACGGCGAAGCAGAATGAGCACTGTCTCAAGAACTTTGACCTCACTGAATACCGTCAGGTGCTAAGTGACCTTTCCATTCAGATCTATCAGCAACTCATTAAAATTGCTGAGGGCCTGCTACAGCCTATGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014104:ENSRNOT00000019512:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]