DreINT0100902 @ danRer10
Intron Retention
Gene
ENSDARG00000062003 | myo5b
Description
myosin VB [Source:ZFIN;Acc:ZDB-GENE-031219-7]
Coordinates
chr21:22417934-22419074:-
Coord C1 exon
chr21:22418985-22419074
Coord A exon
chr21:22418085-22418984
Coord C2 exon
chr21:22417934-22418084
Length
900 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CCTGTCTAATTCTGTCCTAGGCG
3' ss Score
9.24
Exon sequences
Seq C1 exon
AAAAACAACGATGACTTTGAGATGACCTCCTTTTGGCTGGCAAATGCAAGTCGACTTTTACACTGTCTGAAGCAGTACAGCGGCGATGAG
Seq A exon
GTGAGATTTTAGACTTTTTACATTGTTTTATTTATATATACTGTATATCTGATTATTTAATTTTGTGAATAGTAACTCAAGCTCCTTTTACCCAATTTTATTTGGTCATTTTGCAAATAAATAAGCTCAAGTGATGCTTAAAAAGTTGGCTTTTAAAGACCATATTAACCCAGTTTTAATCTTTGTGTAAAGTTTTTTTTATATTTTTCTTAATCTACATTCTGGTGACAGTTACACTGTTTCCACCTCCTGGTATTAACATTCAATTTAACATTTCTATGTTATTGTGCAAGTATTAACAGGAGGTTGATTGAGACCGTTTCTATATGTATTTAGCAGATTGAAAGTAAACTACGGCAGCTGTAATAACACAAATAACAGATTAGATTACAAATAACAGCAAAGTAGTTGTTTTTCTTGATAATATGTTACAAACCAGCTTCAGATGTCAGCAATTCTGTTGCTGTCTTTTCCTATCATGAGATAAATACATCTCATGTATTTATCCTTTCCTTTTCTGACTGTAAATGTCTGGTCGCTGGAATCATGTGGACAAACACAGTAGGGTACCAAGCCCTATTTGTTAAAAGTTGATATACATGAATCTGAATTATAGAGTGTCCTATGTGTATCACCCATGGCTTTCCGATCTTTGTTTATTTTTTTAATAAACAGTGTGAGATGTCATGTGATGTTGTTCATCTGAGGTGTTATCTTTCAAATTTTAAGACCTACCAAGCAGTTTTTTTTAATGTCTTGAAACTAAAAAACCTGAAATTCAATAGGGTGTCTTTTTACACGACTGTAGTTACTTAAAATAAGCCAATAGTCCACAGGGGAGCATCAAAAATAAAGTGTAACCAGTGCTCGGTATGATTTGCCTGTCTAATTCTGTCCTAG
Seq C2 exon
GCGTTCATGACCCAGAACTCTGCCAAGCAGAACGAGCACTGCCTGAAGAACTTTGACCTGGCGGAGTACCGACAGGTTCTGAGTGACCTCTCCATCCAAATCTATCAGCAGCTTGTGAAAGTTGCCGAGGCCAACATGCAGCCCATGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062003:ENSDART00000166835:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF058146=DUF843=PD(8.3=20.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACGATGACTTTGAGATGACCT
R:
CGATCATGGGCTGCATGTTGG
Band lengths:
238-1138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]