RnoINT0097242 @ rn6
Intron Retention
Gene
ENSRNOG00000058866 | Myo5a
Description
myosin VA [Source:RGD Symbol;Acc:3143]
Coordinates
chr8:82147439-82149227:+
Coord C1 exon
chr8:82147439-82147528
Coord A exon
chr8:82147529-82149076
Coord C2 exon
chr8:82149077-82149227
Length
1548 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TAACATTGTGTTTATTCTAGGGC
3' ss Score
9.81
Exon sequences
Seq C1 exon
AAAAGAGGTGACGATTTTGAAACTGTCTCCTTCTGGCTCTCTAACACATGTCGATTTTTGCACTGTTTGAAGCAATATAGTGGAGAAGAG
Seq A exon
GTGAGAAAACCTGAGTGGTAAAAACACCATGTTGTACTTTCTTTGACCTTTTAAAGGGAAAGTTTAAAGATGTTTGAATCATGTTAGTTTCTAAATCCCCAAACAGGAAATGTACTGCTTCATGATGTTTGCTGTCTTCTAGTGAACTGGGCGATGATGTGGCTTCTTCCTTCCTAGCGTTTATAAGAAAGCGTGAAAAAACAAGTCAAGCAACAGTCAGGGAAAATAATTGTTTTTGTAACATGTTGTGGTGGTTTACATAGAGTTTAAGATTAGGACATAGAATTGTTTAAAGAAATGGATCTGTTTATGCTAACTACATAAACCTTAAAGGCAACCAACAACAAATTGTATATACATCTGAGCATGAAGGTAGAGACAGTTGGGTCTCGGAGTTCAAGGACAGTCAGAGCTACACAGAGAAATCCCGTCTTGAAAACAAAAAAGATCTTATCTGTATCTTTGTAGTGAAGTGTTCATTTGTTGTTTGATAGAGTTTAACCAAACGTAAAACCAAACTGATGGTTATAACTGAAAGCTGCTTACTATGTGTTTAACAGTACTCAATATACAGAATATGTTTGACATGTGATTGATACAACATGTCATGCAGTTGGCAGTAAACCCATTTTACAGATGAGGCTCAGTGAGATTCATCCTTTAGTCTGTAACCTCTTGACATAAGGAGAACTGTGACTCTGCATCTGCACAGCTTGGAGACCTGTTGCCTGACCCTACCCCATCCAATCTCCCCATCTTTTGTCAGAAAGGCAGGCAGAGCAAAGGACTGTCATGGCAGAATGACAGGATATATAAAGATGAGCAGGACACCTAGAAGGTGAGCCTGAGGGAGCAGAATCCTGAGAAAGGTCATGAAGGAGATCCTATGAGCCCTGCATTTAGACTGTGTTGGCCACTAAGCTGCTCTGTCATTAGGTGGGGCTAGTGAGCAGTGTGCTTAGTGGAAAGTGACTAGAAGACATGCTGCCTTTCTGGGGAGCTGGCCTTTTAAACCAATGCTACTGAAAGACTTTTCTAAGATCTGACTGAAATCATCATGTAGATACTGTGAGTTAGAATAAAATGATAAAGTTCCTTTGTTTTCAAGTTCATAAAGAAACTAGTCTAATCATGTTTATGCATGTTCCTCTGGGTGTAGTATGTATGCATAGGACTATATATGCATGGGACTATATGTAAAGAGCCAAGAGCTAAAGAGTGTTTTCAATTCCTTGTTTAATGTTTGGCAGTAGACCTGCTGTTTTATCAATACGACATGTTCTTTTCTTAAGTTAAATTTCCCCACTTTGCCATTTGAAAACCTTAACTATAGATTGCCAAGGTCATCATCTGTTGTTCAAAGCTAAACAGATGAGGGTGATACAGGAGTGAGTGAAAACACAGGCAACAGCATTGAGAATGATGACCCTGGCACTGGGTAGGAGGGCTGAGAAAGACACAGAGTGAGGCGGACAGAGGCCCTTGGAGACAGTGAGGTAGACAGAGACATTGCCTTCCTGTGCACCACTAACATTGTGTTTATTCTAG
Seq C2 exon
GGCTTCATGAAACACAACACGTCTCGCCAGAATGAACACTGCCTCACCAATTTTGACCTTGCTGAGTATCGGCAAGTACTGAGTGACTTGGCCATTCAGATCTATCAGCAGCTTGTGAGGGTGTTAGAGAACATTCTTCAGCCAATGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058866:ENSRNOT00000079535:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGAGGTGACGATTTTGAAACTGT
R:
TCATTGGCTGAAGAATGTTCTCT
Band lengths:
238-1786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]