GgaINT0029539 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:10115498-10116309:+
Coord C1 exon
chr10:10115498-10115648
Coord A exon
chr10:10115649-10116055
Coord C2 exon
chr10:10116056-10116309
Length
407 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
TATTTTCTGTTGTCTTTCAGTAC
3' ss Score
10.08
Exon sequences
Seq C1 exon
GAATTTATGAAGTACAACACCCCTCATCAGAATAAGAACTGCTTGAAGCATTTTGATCTCTCGGAGTACAGACAGGTTCTCAGTGATTTGGCCATTCGGATCTATCACCAGTTCATTCTTGTAATGGAGAACAACATTCAGCACATGGTCG
Seq A exon
GTAAGACAGCAGAAGTCCAATCAGAGACAAATGTAGCTGGTGAAGAACTTGTATAAAGCCTATGCATGGTGGCAAAGGACGGAGCTGACTTCTTCCTCCTGTAGATTTATACATGAGTACCTGCATGCATATTTCTGCACCTTCAAATGTGAATGTTATATCCCCAAAGGGCTTTTTCCTTCCAACACTTTCCTTGTGTGGGATAATACTTTGAAAGAGACCAAAATTCTACAAAAATAGAAGTTACTTTTTCAAATTTGTGTGCTTCAGAAGCCCTTGTGGGTATTCCATTTACATAGTATTATTTAAAATATCATGAAATTATGTTCTGTTCAAGAATTAACTTAATGGAACTGGAAGGAGCTATAGGACTGTTAGTCTTACAGTTATTTTCTGTTGTCTTTCAG
Seq C2 exon
TACCAGGTATGCTGGAATATGAAAGTCTCCAAGGAATTTCTGGCTTGAAACCTACAGGGTTCCGTAAACGTTCCTCTAGTATAGATGACACGGATACGTACACAATGACATCCATCCTGCAGCAACTCAGCTATTTTTATAGTACGATGTGCCAGAATGGCCTGGACCCTGAGCTTCTCAAGCAGGCAGTGAAGCAGCTTTTCTTTCTCATTGGAGCGGTCACCCTCAATAGCCTCTTCCTCCGCAAGGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023524:ENSGALT00000039054:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0184314=DIL=WD(100=28.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCTCGGAGTACAGACAGGT
R:
TGCGGAGGAAGAGGCTATTGA
Band lengths:
342-749
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]