BtaINT0098219 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58264111-58265595:+
Coord C1 exon
chr10:58264111-58264261
Coord A exon
chr10:58264262-58265312
Coord C2 exon
chr10:58265313-58265595
Length
1051 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
GCTTCCATTTTTCTCCGTAGTGC
3' ss Score
9.03
Exon sequences
Seq C1 exon
GAATTCATGAAGCATAATAGTCCACATCAGAATAAGAATTGCTTGAACAATTTTGACCTTTCAGAATACAGACAGATTCTTAGTGATGTGGCTATACGAATATATCATCAGTTCGTTATCGTAATGGAAAATAACATTCAACCGATAATAG
Seq A exon
GTAAGAAAAGAATTGATGACTAAGAAATATTTATAATGATGTTGAGACCTTAAAAAATAAATCTGCATGGAATGTGTAATTGAAAAGAATATAATTTTTTTTAAGCAAATAGTAAAATAATGTATTGGTTTAGTCTTATCCTTTTCTGCCCCACCCTTCCCCCAAAGAAAACAACTAAGTCATGTTGACATAAGTGGTTTTAGTCACTAGGGTGATAGTACTCATAGTAGCAGAAAATGCCAGTGTGGTGTTGACAATCCAAATCGTGACTTGGTCATGTTTCCAGTGGTATAAGCAAACGTTCACACAAAAACCTCTACATCTCCCAAAAACAAGCATTAATTTTCAGAGGTGGTACAGCCATGATACTCAGAAAGGAAGAGAACCATTTTTTCCTCAAGTAATACTATTTTTAGAGATTTTCCCTAACCACAATGCAAATAAGAGATTCACAGTATCACCTTACATAAGTATGCTTCTCTACTGTAGCTTCAAAGAACATAATTTTAGAACAAGAAACTTTACTAATATAAATGCCCACTATTTAATTCTCTGATTGCCTAAAGTGATTACATATATAAAAGTACATGGGTCATAGTTTTCTTTCTGTAAGGGGGATCCATCCTGTAGGGAAAGATTTGGGAGAACCGCTGCTCCTTATGTGGCTAACACTGGTTCTGAGCCAAGTATTTTTGAAATCCTAGAGCTCCACTCAATTTCTTGTATACTTTCTTCAGTTTTCTGAAATTGAAATACTGTAGGCTTTAAGTAGTTCCAGACCATGAGTTGTCATGCTAACCAGCTCTCTCTCCTGTCAAGTTGAAAGAAGAGGAACTGTTCCCCTCCTGTAGATGGTGGTGCATTCCCATCCACCCCTTACAGCCTGGTGTTCCCCAACCCTCCATCCTTCTGCTTTCTCTGCTACAGCTGTATCCACACTAACTCTTGTGAAAATTGTCCCACTCCCTGAAACAGACACACGAGAGCAGGGGAAATGTCCTCTGGGCGTCCCCACTGCATGTGCAAGAAAAGCTTCCATTTTTCTCCGTAG
Seq C2 exon
TGCCAGGCATGCTGGAGTACGAGAGTCTGCAGGGCATTTCTGGCCTGAAGCCCACAGGCTTCCGGAAGCGGTCCTCCAGCATAGATGACACGGATGCCTACACGATGACCTCCGTCCTGCAGCAGCTGAGCTACTTCTACAGCACCATGTGCCAGAATGGCCTGGACCCTGAGATCATGAGGCAGGCAGTGAAGCAGCTCTTCTTCTTGATCGGGGCGGTGACCCTGAACAGCCTCTTCCTGCGCAAGGACATGTGCTCCTGTAGAAAAGGGATGCAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763:ENSBTAT00000004905:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0184314=DIL=PU(31.1=34.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACAGATTCTTAGTGATGTGGC
R:
TACAGGAGCACATGTCCTTGC
Band lengths:
348-1399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development