DreINT0100870 @ danRer10
Intron Retention
Gene
ENSDARG00000074622 | myo5ab
Description
myosin VAb [Source:ZFIN;Acc:ZDB-GENE-050411-72]
Coordinates
chr25:7440835-7441798:-
Coord C1 exon
chr25:7441648-7441798
Coord A exon
chr25:7441118-7441647
Coord C2 exon
chr25:7440835-7441117
Length
530 bp
Sequences
Splice sites
5' ss Seq
TCGGTAACT
5' ss Score
6.25
3' ss Seq
TAATCTTTTCTTTATCTCAGCAC
3' ss Score
5.98
Exon sequences
Seq C1 exon
GGATATTCAAAGCACAACACCCCTCGGCAAAATGAACACTGCCTGACAAACTTTGACCTGTCTGAGTACCGGCAGGTTTTGAGTGATCTGGCCATTCAGATCTACCAGCAGCTCATCCGCGTCATAGAAAACATCTTACAACCTATGATCG
Seq A exon
GTAACTCTACAAACACTTAGTTGAAGTCAAACTCTTAGCGTTCCTGTGAATTGCTGTTTCTTTTTTAAATATTTCCCAAATGATGTTTAACAGAGCAAGGAATTTTTCACAGTATTTCCTAAAATATTTTTTCTTCTAGAGAAAGTTTTTTGTTTTATTTTGGCTAGAATAAAAGCAGTTTTCAATTGTTTTAAATCATTTTTGGTTAATATTATTAGCCCTCTTAAAAATATATATTTGATTGTCTACAGAACAAATCATCGTTATACAATAACTTGCCTACTTTAACTTACCTAATTAACCTAGTTAAGCATCTTAATGTCACTTTAAGCTGTATAGAAGTGTCTTAAAAATATCTAGTCAAATATTATTTACTGTCATCATGGGAAAGATAAAAGAAATCAGTTATTAGAAATGAGTTATTAAAACTGTTATGTCCAGAAACGTGTTTAAACATATCTTCATTAAACAACATCATATACATGGGGGCTAATAATTCACCTGCTCATTTAATCTTTTCTTTATCTCAG
Seq C2 exon
CACCAGCCATGCTGGAGCAGGAGACCATTCAGGGGGTGATGGGTGTAAAGCCTACGGGAATGAGGAAACGCACGTCCAGCTTCCACGAGGAAAACTCTCACTCGCTGGAGTCCATTCTGAAGCAGCTGGATGGGTTTTATTTCACTCTGCTCCAGCACGGGAATGACGCTGAGGTGGTCCGGCAGGTCATCAAACAGCAGTTCTACGTCATCTGCTCCGTCACACTCAACAACCTGCTGCTCCGCAAGGACATGTGCTCCTGGAGTAAAGGCCTGCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074622:ENSDART00000089034:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=NA C2=0.063
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0184314=DIL=PU(31.1=34.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAAAATGAACACTGCCTG
R:
TGAGTGTGACGGAGCAGATGA
Band lengths:
355-885
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]