RnoINT0097322 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82238700-82240545:+
Coord C1 exon
chr8:82238700-82238850
Coord A exon
chr8:82238851-82240262
Coord C2 exon
chr8:82240263-82240545
Length
1412 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
GCCTTCCACCCTTCCGGCAGTGC
3' ss Score
7.77
Exon sequences
Seq C1 exon
GAATTCATGAAGTGTAACAGCCCACAGCAGAATAAGAACTGCTTGAACAATTTTGATCTTACAGAATACAGACAGATTCTGAGTGATGTGGCTATACGAATTTACCATCAGTTCATCCTCGTGATGGAAAACAATCTCCAGCCGATAATAG
Seq A exon
GTAAGAAGAGAATTGGTGACCGAGCGATACTGATAGTAATATCGAGGCTGTTCGCTTTGAGACATAGTCTCCTACAGTCTCGGCTGGCCTTGGACTTGATCTGTCACTGTAGCCAAGGAAGGTCTTGAACTCACGATTCTTCCCCCTGTATTTCCTGAGAGCAGGGATGTCAGGTATATGCCATCACGCCTGGTTTTGCTTAGTACTGAGAATGAAACCAAGATTCCATGCATACTAGGCAAGCATCCTACCAACTGAGCTGCAATTCCAGCCCAAGAGATGTTTTAAAATAGAAACTGTGTGTGTGGTATATGTGTTTATGGGTAGCATAGCTCAAAACACTAAGAAGACAATCACCATAAATGTCTACCTTCTAAGTCTTAGCTTGCTTAAAATGACTTTCTAGCACACGATTGACCTTTTTCTTTCTATAAGTATGCCCTTTTCCTGAGGGAAACCCTGTGGAGGGTTTACACTTTTTATTTTAATGTGCTGTTTGGTTTCTTGTGTGGCTCTACCAAATACTTTTGAAATCCTCAAATCCTACTCCCATTTGTGTAAACGTTGCTCTCTGAAACGTAAATATCTTGGGATTTGATGATCCAGACCCCGACCTACTTGCTGTTGGCTAGCTCTCTTTCCCATGAGGATCACTGTTTCAAGCCTCCAGGAGGTGGCCCTGCCCTTCTGTAAGCTGTGGTCCACACCCTGGCATCCTCTGGTACCCCGATGTATCCAGTTCTTTTTTTTTTTTTAAGCATTAGTACTTTGTTTGTTTGTTTGTTTTAAAGATTTATTCATTTATTATATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCGGCCCCCTGTTTGTTTGTTTCTATGTCAAAAGAAACGTAAGGATGAGTTTATTTTGGCTCACATATTAAGGAAGCACGGTCCCCAAGACAAGAATGCTGACAGGCAGGACCATGAGGCAGCTGGCCACACTGCATCCACAGTGGGAAAGCAGAGAGAGTTGCTCACGGGAGCTCAGATCGCTTTTTTCCTTTTATTTGGACCCCAGTTCGTGAGTGCCTCTGATCCACACTTAAGGTGGGTTTTCCCACCTCCATTTACCTAATTCTAGAAAATCCCCCTTGGACAGGCCCAAAGTCTGTCCCCTAGGTGGTCCTAAATCCCAACAAGCTGGCAACCAAGATTAACCACACCACTCTCACACCTCTATCCACTGACTGTGGAAAAGACGCCTGAGATTAGGGGATGTGCGACCCCGAGACCCCTGTGTAAGGAGCCTTCCACCCTTCCGGCAG
Seq C2 exon
TGCCAGGCATGCTGGAGTACGAGAGTCTGCAGGGCATTTCCGGTCTGAAGCCCACTGGTTTCCGGAAGCGCTCATCCAGCATCGATGACACCGATGCCTATACCATGACGTCCATCCTGCAGCAGCTGAGTTACTTCTACAGCACCATGTGTCAGAACGGCCTGGACCCTGAGATTGTGAGGCAGGCGGTCAAGCAGCTGTTCTACCTGATCGGGGCGGTGACCCTCAACAGCCTCCTCCTTCGAAAGGACATGTGCTCCTGCAGGAAAGGGATGCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0184314=DIL=PU(31.1=34.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTGTAACAGCCCACAGC
R:
GGTAGAACAGCTGCTTGACCG
Band lengths:
351-1763
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]