GgaINT0029754 @ galGal3
Intron Retention
Gene
ENSGALG00000003005 | F1NWX4_CHICK
Description
NA
Coordinates
chr10:4551988-4552267:+
Coord C1 exon
chr10:4551988-4552032
Coord A exon
chr10:4552033-4552157
Coord C2 exon
chr10:4552158-4552267
Length
125 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TTGTACAATTCCTCTCTTAGGAG
3' ss Score
7.53
Exon sequences
Seq C1 exon
AACGAACGAGAGCAGATCATGACTACAAATGTCTGGCTAAACCAG
Seq A exon
GTAATAGAACCCACAGAAGCATGCTCTTGTAATCCATAAACGCCACTGCTTTCACTCCATCATAGTGACTGTTTTGTTTGTCTGGTCTGGATACTCCCATCACAATTGTACAATTCCTCTCTTAG
Seq C2 exon
GAGTGGATTGATTATCGTTTGGCTTGGAAACCTTCTGACTACGAAGGAATAAATATGCTGAGAATACCTGCAAAACATATCTGGCTCCCAGACATTGTGCTTTACAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003005:ENSGALT00000039804:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAACGAGAGCAGATCATGAC
R:
AAAGCACAATGTCTGGGAGCC
Band lengths:
147-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]