GgaINT0029946 @ galGal3
Intron Retention
Gene
ENSGALG00000004624 | MYO5A_CHICK
Description
NA
Coordinates
chr10:10030694-10033579:+
Coord C1 exon
chr10:10030694-10030800
Coord A exon
chr10:10030801-10033313
Coord C2 exon
chr10:10033314-10033579
Length
2513 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TATGATTTTGTTTTTATTAGCCC
3' ss Score
6.34
Exon sequences
Seq C1 exon
GGATTAGTGATTCCTACCAGATGGGAATTTTCCGAATCCTTGCTGGCATCCTTCACTTGGGCAACGTGGAGTTTGCATCTCGGGATTCTGACAGCTGCGCCATTCCT
Seq A exon
GTAAGTAGCAGATGAGCTCAGGAGCTCATTCTCTCCTGCATTTGCATTCTCTCCTGGCAGTCCTCTCTTCTGCTTGTTTGCAGGAATCTCTCCTGGAAAAAAAAAGTGATAGCATAAAAATGCTAACTGTGTTCTTTCTAATTTGTTTATGTTCTTTTTGGAGATGGACCCAACTCTTAGTTTACAACCTTTACACAGTATTCTTTGTATTATGACTGTGGTGGCCTTAATTTCTTTTCGGCATTGTAATTGGTCTGTTCTAGAAAGGTCTTCTAGACAGACTAGCTTTGAAGTCCTGGGCAGATGTCTAGATCTTTATATTCCTACATGAATACATTCCCTGCCAACAGTAAATGGTTTGCAGGATGGACTGCTTTATGTTAAATGCCAAACTAGCCAAATAATTGCAAAGCAAATGTATTGCAAAGTCCTCTGGGGTGTCTGCTTCGGAGCCAAGGATATACAGATGTGATTCATGTGATGCATTTAAGATTACTGTGGTTTTTTCAGTCGTTTATTAACTTTGTGAAGGTCCACAGTGAGAAGTATGAAGTCTGGTATGAACAAAACTTCTTTATTCAGTAAGGACCAAAGCTTCTTACTGAAGTTATTATTCTGGAGATGGGAGACAAAAAAGATCTGGCTTGTTCTGTTCTTGCCACTCTTTTTTTTCCTTGGATTCACAAGTGAGCAGCTTCTCCTTCTGCCTTTCCTTGAATGCCTACTGCTGTACTACACAGCCTTCATCATTCTCTCTTCAAACAGTCGCAGCAGTTGCAGGCTTTATTCTCACTTTGCTAACAGTCGGTTTCTCAAGCATCTGCAGTAGCAGTTTCTGGAGCTGAGACAACAGGTCCTCCATAGGACCACAGCTAATTAGTGTGCCTGCTCTGACACCATCTGAGGAATCTAATAGATAGTTGCTGTGAAACCACAACAATAGTTTAGCTCTTTGATGTGTCTTAAAAAGGTTTTGACTACAAAGGAAGCATCATTTAATGATCGCAGGTGGGAAGTAGATGAGGCCCAGAACATGATGAGGTAGCCTGGGTTGTAATGGATATCTCTGATGCAGTAATTCCATTGAATGAATAGTACAAAGCTGAAAGCTCCTGTGCAATCCTATCCTGATGTGGTAAGCATGTAGCATGCAGAGACAAATGTCTCCTCCCTGGCTTTGGCTACCTGAGCTGTGTTGTTCTCTGACAGTAGTCCTGTTGTGTAGAGCTCTGCCACCATGCATATGGGTCTGTCTGGGTGCAGTGATGCAAGGCTGTGCTTTGGAGAGCGCAGTGAATGTCTCCACACCATTCTGTGTGAATTAATCACTTTGTTTAACGTCAGCTTGAGTAACCCTAATGTGGAACTCTTTTGTGCAGTTTTTGTTATTTTTGTTGTTACTACTTTATTATTGTTTCCTGAGCCAGTTAAAGTCCTGTGGCTAAGCTGAAAGAAGATGTGCTTGGTTAACTGGATTTTAGAGGTGTAACAGGACTGCCTTGGGGACTGTATGCCCTAAGGACTGCAATAAACCCCAAAGAAGGCAGAAGGACATAGAAAAAGGAAGATAAAGCTGATCTGCTCGAAGTCATTGGGCACATAGTAACGGTTCCCTATAATCTGTCTTTGTCAATATGCTGCTTGTCAGCATGCTCTTGAGCCATAGAGTGCGAAGTGAATACGAGGAAGTAGTGGTAGGGGAATTCCTTCAGAGGAAAGACCTGTCTGTCCTTGATTTCTAGCTTCTGGTTTGCTTGTTAGTAACGAAGTATAGTGACTTAACTCACTGAGTAGTAAACCCACTGCACAGATTTTTATGAAGAAATTTTAAATACCCATTTCAGTGTGCAAACCTCAGTAGTTGCTTTGACACCATAAACCAAAGGTCGATTTTATTTTATTTATTTATTTATTTTACATTTTTTTTTTTGTCCAGTTTGAGAGTTAGGTAACATCCTTTCTGTTCTCTCATCTCTTAACATTTGCCTGCAGACTTGAGCAGGGAAATACTGTTTTAAATTCTGAGACCAGAATGCTAAATCACTTTGACACTTCTTCCCCCACTACCTGTCACTCCCTGCCACAGGTGTATATGGTTAGAGAAGGGCACTACACAGAAGCTGTAATCCATTCTGTCCTCAGCACATAGCTGATGGCCTGTCCTCTGCATTTTACTCAAAACTAGGACAGTTGGAGGTATTCAAAATGCAAAGTCCATCCCTGGGAAGCTAGATGATTCATTTTTGTGGGGGTTGCAGGTTGCCTGTGTGGGACTTCTTTATGAATGCAGGTACAGGGAAATGCCTTTGGGGGAACTGTTTCAGTAATTTACTTCAGTGTTGTGAATGTGATATGTGGGTAGGGAACTTGTGCTCTGGAGAAAGATAAGCTAAGGGAGCTGTACTTGCTGCTTATGTTTAGATCACTACAGGCAGGCAGTTCTTCTGATATTGCAATTGCATGTATGCTACCAGTAATACTATTTCAAGACCTTATGATTTTGTTTTTATTAG
Seq C2 exon
CCCAAACATGATCCCCTCACCATCTTCTGTGACCTCATGGGCGTGGACTATGAAGAGATGGCTCACTGGCTTTGCCATAGGAAGCTCGCAACTGCCACTGAAACCTACATCAAGCCAATTTCTAAACTTCATGCCATCAATGCCAGAGATGCACTTGCCAAACATATCTATGCTAATCTCTTTAACTGGATTGTAGATCATGTGAACAAAGCCCTTCATTCTACTGTAAAGCAACATTCTTTCATTGGAGTACTGGACATTTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]