HsaINT0108791 @ hg19
Intron Retention
Gene
ENSG00000197535 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:7602]
Coordinates
chr15:52689398-52697590:-
Coord C1 exon
chr15:52697484-52697590
Coord A exon
chr15:52689664-52697483
Coord C2 exon
chr15:52689398-52689663
Length
7820 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
AACTCATTATCTTTTGGCAGCCC
3' ss Score
4.93
Exon sequences
Seq C1 exon
GAATTAGTGAATCTCATCAAATGGGAATTTTCCGAATACTTGCTGGCATCCTTCACTTAGGCAATGTTGGATTTACATCCCGAGATGCAGACAGCTGCACAATACCT
Seq A exon
GTAAGTTCAGAATAAGCTTTAGTGGGATGGCAGTTGAATTATGTTTTAGATTTGTAGATTGTTTAAAGAAGCAATATAGTTTAAGTCTCTCTATCAATATTATCAGAAACATAATTATCAAAGACATATGTTATCCAAAGGAGAATCTCAAACTGAGAATAAAGAAATATGGATTCTAATCTCTGGTGCATAGTGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACAGAGAGAGAGAGAAAGAGAGAGGGTTGGATAGATGAGATTAGTGACTATAACGCAGATGTGGCCCCACAAGATCAGAAACTCATGGAAGTTAAAGCTATTAGGGATCATATCATGCCCTTACTGAAATGTTTCAGGACTCCCCACTGCCTTCAGAAGCAGACCCAACACCTTACTTGGCATGATATGACATGAAAGGGCCTTCATGACTGACCCCTGACTTCCTATTGAGCTTCTTTCTCATTGTTTCTCACACTCTACATCCAGCCATTTCCATGCCAGGCTGTTTCTCTCTCCTGGCTTTGCTCAGATTCTCCCTGCTGGGGTACATACATTGCTCTTCTTCCCTAGCCAGCTCTTACTCACGTCTCACAGGCAGATCTCTAGCATCTCTTCTTAGATACACACTCACCCTTCTGCTTTCCTTTATTGTAGCTCAAATCACATTGTTCTATAAAGGTCTCTCCTGCTTGCCTTTACCCACTAGGATTTGAAGTCCTTGTGGATAGAGCCATGCTATTCATTGTGGTATTCTTAATTAAGGCCTTAATTTAAATGGTGTTTATTCAACTCACTTAGTTGCCTTTTTTCTCTGGATCTATAGCCTCTTGTGTAAAAACAGATTCTCTACTCCTGTAAGAAAAGAATCTATTTCTTGTGTTTTCTGGATATAGTACTTTGATACTATATTAGATGTGTGAGACATGATATAATATAAAATAAATGACTTTATGATTTAAAGAGAAGACTTGTTCCATAACTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTTTCACTCTTGTCGCCCAGGCTGGAGTGCAAAGGCATGCAATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAGGCGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGACCACAGGTGTACACCACCATGCCCAGCTAATTTTTTATTTTTAGTAGAGATGGGGTTTTGCCATGTTGGCCAGGCTGCTCTTGAACTCGTGACCTCAGATGATCCGCCCACCTTGGCCTCCCAAAGTGCTGGGATTATAGGTGTGAGGTGTGAGCCACCACATCCAGCCCTGTAACTTATTTATTAGTCCAAGGGCCAAGAGCTAGATGGGCAGACAGTTTGGTTTACAGAAAGCTTGATCCTTACGATTTTCTTTATGAATATTTGAGGTGTAATTTTCCTAAGCCATGGGTCCTAATTTTAGATGCATGATTCCTCCTCCCCTCCCCCAGCCTCTTTTCCTAATGGTGGTTTTGTAAAAGGCAAAATGATGATTCTAATTTAAACCCTCATTTCTTCTAATGAAACATTGCTAGTCTTTTAAAAAAGAGCTTTGTTGAGATATAATTCGTATATCATACTCATTTAAAGTGTACCATTAAGTGGCTTTTAGTACATTCACAGATATGTGCAACCATCACCACAGTCAGTTTAAAATATTTCTGTGACCTCAAAAAGAAACCCAGTACCCTTTACTTATTGTTACCTATGTGTCTATTTCCCTACCCCTAAGCAACCATAAATCTGTTTTCTGCCTCTATAGATTTGCCTGTTCTGGACATTTCATATAAATGGAATCATATAATATGTGGTTTTTCGTGACTGGCTTCTTTCAAAATCCATCCATGTTGTAGCACGTGTCAATACTTTATTCTTTTTTACGGCTGAATAATAGTCCATTATATGGAGATACCATATTTTGTTTATCCACTGGTTGATTGTTGGATATTTGAGTTGTTTCACCTTTTGGCTGTTATGAATAACACTACTCTGAATGTTGGTATACAAACTGGATTTTTTAAAAAGAACTCTGATTTCTGCATCACCATCTTTCCTCTTTGCCCTTGTGACCTTTCCCCAAATGTCAAGCTTCTCCTAATCAAGAAAGTCATGACTAATGTTATGTCACATATATCACTTCATTATGAGTCTTACCTAAAATTTGAGTGTACTGTTTTCCTATTTGAGATGTCTGGAAGTTATTAATATCATCTTGGAGAAATAGTACTTATAATGTCCAGAAGTTCCTTCCATCCAGTTCTTGTAATTCTATGATTTTTATTTTCTAACCGGTGCTTGTCAACTTTGTTGATTTGATGATAGCTATAAGTACTACAATTTCACTATTTGGGGTAGGTGGAGATTAAGTTAGTTTTTGTTTTGTTTTGTTTTGTTTTTTGTTTTTTTGTTTTTTTCTTTTTGAGACGGAGTCTTGCTCTGTCGCCTGGTCTGGAGTGCAGTGATGCGATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCTATTCTCCAGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGTGTGCCACTGTGTCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGATCTCGAACTCCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCTAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCTGGCCTTAAATGAGCTTTAAAAGTTACTGGTAAGACATCTCTATTTGATAGTTCTGCCCCACCTTGAAGGCATTTGCTGAACCCAGTGACCTTGAGCTTTGGGTTTCATAGCCAAGTGAGCTACAGAAGGCAAAGACACAGGACCCATATAAACAGGGGAACACAAAGACTCCTGCCTAAAGCTGAGACCCTAAGTGGGGAGCTAGTAATCAATTTGCCCACCACCCACTCCAAGAGTATAAAGAAAACTTAACCTGACCCACACTTTGGTGCCAAGTAGAGGCAGAAAACTAGCTCCCTAAAAATTTATAACAACAAACTGACTCTCACACATATTCATTCCCAGACTGATTTCATAGTTCCTGGAAGGTCTCAAAAAACTACATACAGAAAATATAGCTTAAATTGATCCTGGGCTGGTAGTGGCCTAGGCGCCTGACAGAAGCAACTGCAAATCTACTTTGGAGGACCCACCTTCAGTCTAGGCCTCAGTGGAGTCCCATCAGAAAAGTTACAAGAAATATTGACTCACAGTCAAAAATCACAAGTCCCCCAATGAAACAAAATAGAAGGAGCTAGGAGAAACGACAGATAGCAGAGTCATACCTGCTAAGAATGCCAAAATTAATAAACAGCAGATTTGGTACAACTGAAGAGAAAACTGATAAGCTAGAAGGTAGATGTGAAGAAATTGTCCAAAATGCAAGATAGGACCCAAAGACAGAGCACTTGAAACAGTAGTTAAGAGAGAAGAAGGATAGAGTAATAATGTCTAATTTTAATCTAATGAAAATTCATAAAGGAGAGAAGAGAGAGAATGAAGCAGACATAATATACCAAGAGATCATTACTAAAAAATTTTTAGAACTTGTGAAAATGACTAACCCACATATTCAGAAAGTCCAGAAAATCCCAGTTAGGATAAATAAAAAGAAATCTATTCCTAAGAACATCATAATGATATCAAAGACAGAGGAAACTTAAAACAGAGAGATTAAGAGACTGCCCTTGAAGAAATAGCAATTAATCTGATAGCTCACTTCCCAGCTGCAGCTATAAAAGCCAGAACACAGTGGAATAATATCTTCAGTGTGCTTAGAGTGGAAACTATTAAGTTAGAATTATATATCCCGTTAAAATATCTTTCTAGAATGAATTGAAATTGGAAGCATTTTCAGACAATTAAAAACTTATGAGAGGCCAGGCGTGGTAGCTCACACCTGTAGTCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACCTGAGGCTAAGAGTTTGAGACTAGCCTGGCCAACATGGCAAAACCCTCTCTCTACTAAAGATACAAAAATTAGCTGGACATCATGCGTATGCCTATAATCCCAGCTACATGGGAGGCTGAGGCATGAGAAGTGCTTGAACCTGGGTGGTGGAGGTTACAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGAGGATAGAGCAAGACTGTCTCAAAAAAAAAAAAAAAAGCTTATGAGAATCTGCTGTTGCCAGTGAGCCCTCACTAAAGGAAATATTAAATATTAAAGGATATAGTTTAGGCAGAAGGAAAGTGATCCCAGTTAGAAGATCTAAGATGCAAGAAGAAATGAACTAAGAAGTTAGCAAAATGTGGGCAAATGTAGATAAAATTTGATTAATTAGAATAATAATAGTATATTGATCTGGTAAAAGATAGAATTCCCACAAGACATGTATTAATTACAAAGGGAAAGATAGTTATCATTACAGTCAAGAAACCTGGCAGACATTCCCTTAACCAAGTGATCACAATTGATAGTACCAATATTTAGACCAATCAATATCACATAGCTTTGGATATGACACACTGAGCAGAGTGCAACACCACTTCTCTGGTATTTCTGCCCAAATCTAATCATGAGGTAACATCATAGAGACCCAAACTGAAGGAGTCTTCAAAAAGTCAAGGTCACAAAAGACAAAGAAGAATGAAGAACTGTTCATGTTAAAGGAGACTAATGAAACATGATAACTAAATTCAATGCATGATCCTGGATTGAATCCTGGACCATAAAAATTAATTATTTTTTGTAGAGAGCACTGTTAGGCCAACAAAGGGAATGTGGTAAAATGTTAATATTTAGGGAATCTGAGTGAAGGGAATTTTTTGTACTATTCTTGCAACTTTTCTGTTAGTCTAAAATTAGATAAAAAGTTTAAAATATAAAATGAATCTCCAGTCCCCTACCCTGCCCCCTCACACAAAAGGTAGAACTAAAGTATTGGATAACAGAGGATAAATTGGAATGGGATGTTTGGAGTTAGTGTTACTTAATTACATTATGTTAATTATAAAACAAAATAGTAACAAAGTAAACCTTTCAAACTAGTAGAGAGGAAAATGGATTGAAAAAAATCAAAATATAGCAAGAAAGAGGGAGAAAAACAAATGTTGAAAAGTAGGACAACCAAAAGAACAAAATAAGATAGAAATAATTAAAAATGGACCAAGTGCTCCAGCTAAAAGATTTAGATTGTTAGACTGGTTAAAAAAATTCAGATATAACCATGGAATACTACCCAGTCATAAAAAAGAATGAAATCATGCCCTTTGCAGCAACATGGATGCAGCTGGAAAACATTATCCTAAGTTATGCAAAAACAGAAAACCAAATACAACATATTCTCACTTATAAGTGGGAGCTAAACGTTGGGTGCACATGGTCATAAATGGGAACAATAGACACAGGGGAATACAAGAGAGGGTAATGGTTGAAAAAAACAACCAATTGGCAGCTATGCACACTACCTAAGTGATGGATTCATTCATACTCCAAATCTCAGCATCACACAATATTCCTTTATTGTGTACATGTGCACAAAGCTGCACATGTGCCCCCTGATTCTAAAATACAAGTCAAAAAAAGAAAAAAAAGTTTCAGGTATATACTTTTAAAAGAAGCATTCCTAAAATATAGAGATACAGAAAGTTTGAAAAAAAAAGTTTAGAAAAGACATGCTAGCTAGGACAAAACTGGCAACACTGTGCACGTATTGAACAAAATAGACTTTGAGGCCAAAAGCAGTGCTAGAGGGAAATAAAGTGACTTTGCAATGATAAAGATTTTATTCACTGTGCATGGTGTGTGCCTGTAATCCTAGGAGACTGAGGCAGGAGGATCTCTTGAGTCCAGGAGTTTGAGGCTACAGTGAGGTACGATTGTACCACCACACTCTAGCCTGGGCAACAGAATGAAATCTCATCTCTGAAGAGAACAGATTTTATTCACCAGGAATATGAAATAGTGCTAAACTTCTATATACTTAATGACATAGCCTCGAAAGATATATAGCAAAAATCAACAGAAACCTCAAGAAGAGACAAATTTGCTATCAGAGTGGGAGATTATTGACTTCTCTTAATTATTGATAGGTGAAGTCCAAAATGAGTAAAGCTGTGGAGAATTTAAACCAAACAGTTAACAATCTTGATGTAATAGAACAATAAGGTAACAACATTCAAGTAGAATATGTTTACAGAGTGCTGACCCACCTTTTTTTTTTTTTAATTTTAAGAAAAAAATTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACTATCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCAATTCTCTTGCCTCAGCCTCCCCAGTAGCTGGGATTACAGGTGTCTGCCACTACAAGCAGCTAATTTTTGTATTTTTGGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTAACCTCAGGTGATCCTCCTGCCTTAGCCTCCCGAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCAGCCTGACCCACTTTTAAATGATGCCGAATTCTAAATACATACATATATATGGCTGCTTATTTAAGGGAGTTGAGCAGGCAGTGGTGCTGATTTGTATCTAAAGTGATTACTTGGGAGAAAGGGGGATGAAAGAAGGAAGGGGTGCTTGAGTGTGAAGAGTCTAGAGATGAAGGTGTCAAGGAGACCCAGGTTCTAATGCCAACTCTGACATCAATTGCCAGCTGATTTTTGACAAGCTATTTGTTCTCTTGGGTCCTATTTCCTCAGTTATCCACCAGAGACAATGTTCACCCTCCCTATGCCCCAGGAATGTCAGATTTGACTGATACATGTGATTGAAGATGTTGAAAAATATAATGTACTAACATGGATTAAATTAGACAAGTATTTATCAAACATCTACTCATGCAAGTCTCATGGAAGATATTCTAGGGGGTACAGGGATATGTAAATCATGGAAGTCATTCTAATATAAAAAGTCACACAAATAACTATCAAGTTACCTGCTTACAATCCTTCAGTGGCCTACCATTGCTTCAAGGATAAAGACCAGCTAGGATATAGCCTCTGTCTGTTTCTGTGATTTCAACTCACATTTTCTCCCTCATTCAGCTTCAATCCTTCCTATTGATGATTTCCTTCCCACCACAGAATGTTTTTGCCAGCTGTTTCCTTGGCTTGGAAAATCCTTTTCTCCTCCTTTCACCCAGTTAGCACCTTCCTTTTCTCAAGGCAACTGTCTCCTCCTTCCAAAATAGAACATATTCCTCTCACATGGACTCAGCATAGTGTCCTTGGTCTTTGTGGTATTTTTCATTTTAGGGAGCAATCATTTGATTAATACCCATTTCCCCAAGTGACTATAAGTTCTAGGAGGGCAGGGACCATGTTTGTTTTTGTTTTCTGGTGCATAGTAGCACTCAGTAAATAATTGTTGACTAGCTGACTGATTTTTTGACTGAATGAATGAAGATGCTTTAAGAGAGATACAAACAAATACTATGAAGAGTCAAAGGAAGAGGGAATTTTTGAAGTGAGCCCCAGAAGAGATTGCAAAATGCTGCCTGGATGCCAGTTTAATGGATGAATGTGATTATTATCACTAATCAACTTTGAGTGATCTTGGTGTTTGTTATAACAAAGAAATTGCTGAATTTTATTTGTTAACTCTTTGTTAACATTTTCCGAGAGATTCTTACTTGATTTATCTGGTCATAGGAAATAACTCATTATCTTTTGGCAG
Seq C2 exon
CCCAAGCATGAACCTCTCTGCATCTTCTGTGAACTCATGGGTGTGGACTATGAGGAGATGTGTCACTGGCTCTGCCATCGGAAACTGGCTACTGCCACAGAGACATACATCAAGCCCATCTCCAAGCTGCAGGCCACAAATGCCCGCGATGCTTTGGCCAAGCACATCTATGCCAAGCTCTTTAACTGGATTGTAGATAATGTCAATCAGGCTCTCCATTCTGCTGTCAAACAGCACTCTTTTATTGGTGTGCTAGACATTTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197535-MYO5A:NM_000259:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)