GgaINT1018731 @ galGal4
Intron Retention
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8285072-8287955:+
Coord C1 exon
chr10:8285072-8285178
Coord A exon
chr10:8285179-8287689
Coord C2 exon
chr10:8287690-8287955
Length
2511 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TATGATTTTGTTTTTATTAGCCC
3' ss Score
6.34
Exon sequences
Seq C1 exon
GGATTAGTGATTCCTACCAGATGGGAATTTTCCGAATCCTTGCTGGCATCCTTCACTTGGGCAACGTGGAGTTTGCATCTCGGGATTCTGACAGCTGCGCCATTCCT
Seq A exon
GTAAGTAGCAGATGAGCTCAGGAGCTCATTCTCTCCTGCATTTGCATTCTCTCCTGGCAGTCCTCTCTTCTGCTTGTTTGCAGGAATCTCTCCTGGAAAAAAAAAGTGATAGCATAAAAATGCTAACTGTGTTCTTTCTAATTTGTTTATGTTCTTTTTGGAGATGGACCCAACTCTTAGTTTACAACCTTTACACAGTATTCTTTGTATTATGACTGTGGTGGCCTTAATTTCTTTTCGGCATTGTAATTGGTCTGTTCTAGAAAGGTCTTCTAGACAGACTAGCTTTGAAGTCCTGGGCAGATGTCTAGATCTTTATATTCCTACATGAATACATTCCCTGCCAACAGTAAATGGTTTGCAGGATGGACTGCTTTATGTTAAATGCCAAACTAGCCAAATAATTGCAAAGCAAATGTATTGCAAAGTCCTCTGGGGTGTCTGCTTCGGAGCCAAGGATATACAGATGTGATTCATGTGATGCATTTAAGATTACTGTGGTTTTTTCAGTCGTTTATTAACTTTGTGAAGGTCCACAGTGAGAAGTATGAAGTCTGGTATGAACAAAACTTCTTTATTCAGTAAGGACCAAAGCTTCTTACTGAAGTTATTATTCTGGAGATGGGAGACAAAAAAGATCTGGCTTGTTCTGTTCTTGCCACTCTTTTTTTTCCTTGGATTCACAAGTGAGCAGCTTCTCCTTCTGCCTTTCCTTGAATGCCTACTGCTGTACTACACAGCCTTCATCATTCTCTCTTCAAACAGTCGCAGCAGTTGCAGGCTTTATTCTCACTTTGCTAACAGTCAGTTTCTCAAGCATCTGCAGTAGCAGTTTCTGGAGCTAAGACAACAGGTCCTCCATAGGACCACAGCTAATTAGTGTGCCTGCTCTGACACCATCTGAGGAATCTAATAGATAGTTGCAGTGAAACCACAACAATAGTTTAACTCTTTGATGTGTCTTAAAAAGGTTTTGACTACAAAGGAAGCATCATTTAATGATCGCAGGTGGGAAGTAGATGAGGCCCAGAACATGATGAGGTAGCCTGGGTTGTAATGGATATCTCTGATGCAGTAATTCCATTGAATGAATAGTACAAAGCTGAAAGCTCCTGTGCAATCCTATCCTGATGTGGTAAGCATGTAGCAGGCAGAGACAAATGTCTGCTCCCTGGCTTTGGCTACCTGAGCTGTGTTGTTCTCTGACAGTAGTCATGTTGTGTAGAGCTCTGCCACCATGCATATGGGTCTGTCTGGGTGCAGTGATGCAACGCTGTGCTTTGGAGAGCACAGTGAATGTCTCCACACCATTCTGTGTGAATTAATCACTTTGTTTAACATCAGCTTGAGTAACCCTAATGTGGAACTCTTTTGTGCAGTTTTTGTTATTTTTGTTGTTACTACTTTATTATTGTTTCCTGAGCCAGTTAAAGTCGTGTGGCTAAGCTGAAAGAAGATGTGCTTGGTTAACTGGATTTTAGAGGTGTAACAGGACTGCCTTGGGGACTGTATGCCCTAAGGACTGCAATAAACCCCAAAGAAGGCAGAAGGACATAGAAAAAGGAAGATAAAGCTGATCTGCTCGAAGTCATTGGGCACATAGTAACGGTTCCCTATAATCTGTCTTTGTCAATATGCTGCTTGTCAGCATGCTCTTGAGCCATAGAGTGCGAAGTGAATACGAGGAAGTAGTGGTAGGGGAATTCCTTCAGAGGAAAGACCTGTCTGTCCTTGATTTCTAGCTTCTGGTTTGCTCGTTAGTAACGAAGTATAGTGACTTAACTCACTGAGTAGTAAACCCACTGCACAGATTTTTATGAAGAAATTTTAAATACCCATTTCAGTGTGCAAACCTCAGTAGTTGCTTTGACACCATAAACCAAAGGTCGATTTTATTTTATTTATTTATTTATTTTACATTTTTTTTGGTCCAGTTTGAGAGTTAGGTAACATCCTTTCTGTTCTCTCATCTCTTAACATTTGCCTGCAGACTTGAGCAGGGAAATACTGTTTTAAATTCTGAGACCAGAATGCTAAATCACTTTGACACTTCTTCCCCCACTACCTGTCACTCCCTGCCACAGGTGTATATGGTTAGAGAAAGGCACTACACAGAAGCTGTAGTCCATTCTGTCCTCAGCACATAGCTGATGGCCTGTCCTCTGCATTTTACTCAAAACTAGGACAGTTGGAGGTATTCAAAATGCAAAGTCCATCCCTGGGAAGCTAGATGATTCATTTTTGTGGGGGTTGCAGGTTGCCTGTGTGGGACTTCTTTATGAATGCAGGTACAGGGAAATGCCTTTGGGGGAACTGTTTCAGTAATTTACTTCAGTGTTGTGAATGTGATATGTGGGTAGGGAACTTGTGCTCTGGAGAAAGATAAGCTAAGGGAGCTGCACTTGCTGCTTATGTTTAGATCACTCCAGGCAGGCAGTTCTTCTGATTTTGCAATTGCATGTATGCTACCAGTAATACTATTTCAAGACCTTATGATTTTGTTTTTATTAG
Seq C2 exon
CCCAAACATGATCCCCTCACCATCTTCTGTGACCTCATGGGCGTGGACTATGAAGAGATGGCTCACTGGCTTTGCCATAGGAAGCTCGCAACTGCCACTGAAACCTACATCAAGCCAATTTCTAAACTTCATGCCATCAATGCCAGAGATGCACTTGCCAAACATATCTATGCTAATCTCTTTAACTGGATTGTAGATCATGTGAACAAAGCCCTTCATTCTACTGTAAAGCAACATTCTTTCATTGGAGTACTGGACATTTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]