GgaINT0029947 @ galGal3
Intron Retention
Gene
ENSGALG00000004624 | MYO5A_CHICK
Description
NA
Coordinates
chr10:10033314-10034249:+
Coord C1 exon
chr10:10033314-10033579
Coord A exon
chr10:10033580-10034167
Coord C2 exon
chr10:10034168-10034249
Length
588 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGAATATCTACATATTTTAGATT
3' ss Score
7.14
Exon sequences
Seq C1 exon
CCCAAACATGATCCCCTCACCATCTTCTGTGACCTCATGGGCGTGGACTATGAAGAGATGGCTCACTGGCTTTGCCATAGGAAGCTCGCAACTGCCACTGAAACCTACATCAAGCCAATTTCTAAACTTCATGCCATCAATGCCAGAGATGCACTTGCCAAACATATCTATGCTAATCTCTTTAACTGGATTGTAGATCATGTGAACAAAGCCCTTCATTCTACTGTAAAGCAACATTCTTTCATTGGAGTACTGGACATTTATGG
Seq A exon
GTGAGTCTTTTTGCTAGAGGTGCATCACTTCTTACATGATTATCTACCACAAATTATTTTGGTCTTTGTCATGCTACACTGTTTGGATTAAACAAACAAACAAAACAAACAGCCAAAAAGACAAAACACAAAAAAACCTTAAACCAAGCCCTTACCTGCTGCTTTTTCTAGGTGAAGGAAGTAGGTGTTTAGTCTTGACAAGCCATCCAAGATCTTTGTCTTGACTTTTAAGTGTGACATTTACTGTGGGATTTCAAATTTTTTATATCGGTTGTTCCATTATGTATTGTATTGGTGAAGGTCATATGCCAGTTGTCACCTCATGGTCAGAGTTGACAAAGGTAACTAACATGCTCTCTAGGACCATCGATCCCTTCCCTGTGTTCCTCATCCCTGCAAAAAAAGAGCATCTCTGAACTGCCCTTACTTTGTGACTTGCTATTTCCCTATCTGCTTTGTTACATGGTTGTGGTTTTTATGCCTGGAATAATGCAATGAATTTGATTGGGGGGAGGGAATTTAAAGTTATGGAATCATTTAATCTGTCTTTTCACTGAACAAATATTGTTGAATATCTACATATTTTAG
Seq C2 exon
ATTTGAGACATTTGAAATCAACAGCTTCGAACAGTTCTGTATCAACTATGCCAATGAGAAACTGCAGCAGCAGTTCAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(12.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAACATGATCCCCTCACC
R:
TGCTGCAGTTTCTCATTGGCA
Band lengths:
335-923
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]