HsaINT0108753 @ hg19
Intron Retention
Gene
ENSG00000197535 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:7602]
Coordinates
chr15:52688513-52689663:-
Coord C1 exon
chr15:52689398-52689663
Coord A exon
chr15:52688595-52689397
Coord C2 exon
chr15:52688513-52688594
Length
803 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TATTATTTTTGTGGTTACAGATT
3' ss Score
7.42
Exon sequences
Seq C1 exon
CCCAAGCATGAACCTCTCTGCATCTTCTGTGAACTCATGGGTGTGGACTATGAGGAGATGTGTCACTGGCTCTGCCATCGGAAACTGGCTACTGCCACAGAGACATACATCAAGCCCATCTCCAAGCTGCAGGCCACAAATGCCCGCGATGCTTTGGCCAAGCACATCTATGCCAAGCTCTTTAACTGGATTGTAGATAATGTCAATCAGGCTCTCCATTCTGCTGTCAAACAGCACTCTTTTATTGGTGTGCTAGACATTTACGG
Seq A exon
GTGAGTATATTTGGCTAATTGGTCTGCCAGAGAACATTTCTTTCTAGAACTTATCTAGTAACTCTAAGTGGGCATTTGATTCTGTTTCCTACTGGTAAAGAGAAGGGAAACTTTGCCTATGACAATTCAAGAATACCTTGATGATGGTGATGCAATTGCGTGTTGCTTAAAATTTAACTAAAACAAAAAAAAATAGTTCACATCTAGAGCTAATTTACTTAGCTAGTGCATAGACTTAATTGGTTTTCAGATGCTCATGTGGTAAATTATCACTGAAATTCTAAAAATCTAATTTTATTTGCTAGTTTGCCTTATTTGGGTACCTGTCTTTAGCTGTTAAAATCCTTCCTTCATATTTGTGCCTGTTTCATACTTAATTTTTCATTCTCTGGTTCTCTTTTTCAAAAGAACCTGTAGGATCTCTGTTCCTATTTCCCTCCTATATGTGTGTAACACCGTGAGTCAGTATATTGACAAGAGCAATGGCTTTATTATAATTCTGATGTTCCCCACTTGGGGGTGAATGAGCCCTCAAAAACTCATAGTGTTGAACACCTCTGCATGCTGGGGCCTTTGGAAAAAAAAAACAAAAAAAACCTCTCTGCTGCATGGCTGATGCTCATCTGCTGGGTACATATTCCTTGTTACTGACTTAGAAATCTTTATTTTCACTGATATGGAAAGAAAGTTTTACAATGTTGGGGAATGTCCCACTTCTTTCTTCCTAATGTGTATATTTTGAATATTTTTAAAAAGCTTTTTGTTCCTTTTCTCCCCTTTTCATATTATTTTTGTGGTTACAG
Seq C2 exon
ATTTGAAACATTTGAGATAAATAGTTTTGAACAGTTTTGCATAAATTATGCAAATGAAAAACTACAGCAACAATTCAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197535-MYO5A:NM_000259:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(12.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGCATGAACCTCTCTGC
R:
TGAATTGTTGCTGTAGTTTTTCATTT
Band lengths:
343-1146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)