Special

BtaINT0098148 @ bosTau6

Intron Retention

Gene
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58067019-58067992:+
Coord C1 exon
chr10:58067019-58067284
Coord A exon
chr10:58067285-58067910
Coord C2 exon
chr10:58067911-58067992
Length
626 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TATTATTTTTGATTTTACAGATT
3' ss Score
9.75
Exon sequences
Seq C1 exon
CCCAAGCATGAACCCCTCAGCATCTTCTGTGACCTCATGGGTGTGGACTTTGAGGAGCTGTGTCACTGGCTCTGCCATCGGAAGTTGGCCACTGCCACAGAGACGTACATCAAGCCCATCTCCAAGCTGCAGGCCACGAATGCCCGTGATGCATTGGCCAAGCACATCTATGCCAAGCTCTTTAACTGGATTGTAGATCATGTCAATCAGGCACTCCATTCTGCTGTCAAACAGCATTCTTTTATCGGTGTACTGGACATTTATGG
Seq A exon
GTGAGTGTATTTGGCTTAGTGGTCTGAGCCTTTCTTTCTAGACATTATCTAGTAACTCCAAGTAGGTATTTGACTATGTCTCCTACTGGTGAGCTAAAGGGAAAATTAGAAGAGAGTTTTTTAAAGTCTAGTTTCATTTGCTAGTTTGCCTTCTCTGGGTACCTTTCTTTAATGTTGAACCCCTTCCTATACATTTGTGCCTTTTGATGCCTAATTTTTCATCATCCAGTTCACTTTTCAAAAAAACCTTTGACATTTCTATTCCCTTCCCTTCTGTGTTTATGTAAACACAGAATTGTGAATCTGTGAATTGACAAGAGCAGTAGCTTTATTGTAATTCCGATTGTTCCCTACCTGGGGATGAATATGCCCTCAAAAACTCATACTATTGAATATATTCACATGCTGCACCTTGAAAAAAAAATCTCTGCCACTTTGCTGATGTCTATCTGCTGGGTACATATTTCGTGTTACTAACTTAGAAAGCCTTATCTTCACTGATGTGGAAAGTAAGTTTTGCAATGTTAGGGAATTTCCTATTTCTTTTTAATGTGCACATTTTGAATATTTTCTAAAAGCTATTTTTTCCTTTTTCTCCTCTTCCCATATTATTTTTGATTTTACAG
Seq C2 exon
ATTTGAAACATTTGAGATAAATAGTTTTGAACAGTTTTGCATAAATTATGCAAATGAAAAACTACAGCAACAATTCAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489:ENSBTAT00000008516:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=FE(12.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.0=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCATGAACCCCTCAGCAT
R:
TTGAATTGTTGCTGTAGTTTTTCATT
Band lengths:
342-968
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development