BtaINT0098148 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006489 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58067019-58067992:+
Coord C1 exon
chr10:58067019-58067284
Coord A exon
chr10:58067285-58067910
Coord C2 exon
chr10:58067911-58067992
Length
626 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TATTATTTTTGATTTTACAGATT
3' ss Score
9.75
Exon sequences
Seq C1 exon
CCCAAGCATGAACCCCTCAGCATCTTCTGTGACCTCATGGGTGTGGACTTTGAGGAGCTGTGTCACTGGCTCTGCCATCGGAAGTTGGCCACTGCCACAGAGACGTACATCAAGCCCATCTCCAAGCTGCAGGCCACGAATGCCCGTGATGCATTGGCCAAGCACATCTATGCCAAGCTCTTTAACTGGATTGTAGATCATGTCAATCAGGCACTCCATTCTGCTGTCAAACAGCATTCTTTTATCGGTGTACTGGACATTTATGG
Seq A exon
GTGAGTGTATTTGGCTTAGTGGTCTGAGCCTTTCTTTCTAGACATTATCTAGTAACTCCAAGTAGGTATTTGACTATGTCTCCTACTGGTGAGCTAAAGGGAAAATTAGAAGAGAGTTTTTTAAAGTCTAGTTTCATTTGCTAGTTTGCCTTCTCTGGGTACCTTTCTTTAATGTTGAACCCCTTCCTATACATTTGTGCCTTTTGATGCCTAATTTTTCATCATCCAGTTCACTTTTCAAAAAAACCTTTGACATTTCTATTCCCTTCCCTTCTGTGTTTATGTAAACACAGAATTGTGAATCTGTGAATTGACAAGAGCAGTAGCTTTATTGTAATTCCGATTGTTCCCTACCTGGGGATGAATATGCCCTCAAAAACTCATACTATTGAATATATTCACATGCTGCACCTTGAAAAAAAAATCTCTGCCACTTTGCTGATGTCTATCTGCTGGGTACATATTTCGTGTTACTAACTTAGAAAGCCTTATCTTCACTGATGTGGAAAGTAAGTTTTGCAATGTTAGGGAATTTCCTATTTCTTTTTAATGTGCACATTTTGAATATTTTCTAAAAGCTATTTTTTCCTTTTTCTCCTCTTCCCATATTATTTTTGATTTTACAG
Seq C2 exon
ATTTGAAACATTTGAGATAAATAGTTTTGAACAGTTTTGCATAAATTATGCAAATGAAAAACTACAGCAACAATTCAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489:ENSBTAT00000008516:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(12.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCATGAACCCCTCAGCAT
R:
TTGAATTGTTGCTGTAGTTTTTCATT
Band lengths:
342-968
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development