GgaINT1018694 @ galGal4
Intron Retention
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8287690-8288625:+
Coord C1 exon
chr10:8287690-8287955
Coord A exon
chr10:8287956-8288543
Coord C2 exon
chr10:8288544-8288625
Length
588 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGAATATCTACATATTTTAGATT
3' ss Score
7.14
Exon sequences
Seq C1 exon
CCCAAACATGATCCCCTCACCATCTTCTGTGACCTCATGGGCGTGGACTATGAAGAGATGGCTCACTGGCTTTGCCATAGGAAGCTCGCAACTGCCACTGAAACCTACATCAAGCCAATTTCTAAACTTCATGCCATCAATGCCAGAGATGCACTTGCCAAACATATCTATGCTAATCTCTTTAACTGGATTGTAGATCATGTGAACAAAGCCCTTCATTCTACTGTAAAGCAACATTCTTTCATTGGAGTACTGGACATTTATGG
Seq A exon
GTGAGTCTTTTTGCTAGAGGTGCATCACTTCTTACATGATTATCTACCACAAATTATTTTGGTCTTTGTCATGCTACACTGTTTGGATTAAACAAACAAACAAAACAAACAGCCAAAAAGACAAAACACAAAAAAACCTTAAACCAAGCCCTTACCTGCTGCTTTTTCTAGGTGAAGGAAGTAGGTGTTTAGTCTTGACAAGCCATCCAAGATCTTTGTCTTGACTTTTAAGTGTGACATTTACTGTGGGATTTCAAATTTTTTATATCGGTTGTTCCATTATGTATTGTATTGGTGAAGGTCATATGCCAGTTGTCACCTCATGGTCAGAGTTGACAAAGGTAACTAACATGCTCTCTAGGACCATCGATCCCTTCCCTGTGTTCCTCATCCCTGCAAAAAAAGAGCATCTCTGAACTGCCCTTACTTTGTGACTTGCTATTTCCCTATCTGCTTTGTTACATGGTTGTGGTTTTTATGCCTGGAATAATGCAATGAATTCGATTGGGGGGAGGGAATTTAAAGTTATGGAATCATTTAATCTGTCTTTTCACTGAACAAATATTGTTGAATATCTACATATTTTAG
Seq C2 exon
ATTTGAGACATTTGAAATCAACAGCTTCGAACAGTTCTGTATCAACTATGCCAATGAGAAACTGCAGCAGCAGTTCAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(12.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAACATGATCCCCTCACC
R:
TGCTGCAGTTTCTCATTGGCA
Band lengths:
335-923
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]