GgaINT0029956 @ galGal3
Intron Retention
Gene
ENSGALG00000004624 | MYO5A_CHICK
Description
NA
Coordinates
chr10:10046399-10047836:+
Coord C1 exon
chr10:10046399-10046507
Coord A exon
chr10:10046508-10047624
Coord C2 exon
chr10:10047625-10047836
Length
1117 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTA
5' ss Score
3.1
3' ss Seq
CTTTTTACCTCTGAAAATAGGAC
3' ss Score
6.53
Exon sequences
Seq C1 exon
GTGGACATACCAAGAGTTCTTCAGCCGTTACCGTGTTCTCATGAAGCAGAAAGATGTCCTTAGTGACCGAAAACAGACATGTAAAAATGTCCTGGAGAAGCTGATTCTG
Seq A exon
GTACTAGATGTAGTCCTTAGAGCATTTGGAATCTGAAGGAATAAAGATAGGTCTCCTTGCTCAGTGCTGTCAGCCTTTGTCATACCTCAGCAGCCCCTTGCTTTACCTCCTACCTCCTTTTGCAGCCCTGCATTTCCAGACTATGCCATTAGCACCAGAATTGCACCTGAACTGATGTGGTTTCTTGGGATTTTTTAAGAACCAATGAGCAGTGGAGGAAATCAGGCTACAAAGAGACAGCTCTCGGTATTGCCCAGGTAGAGGGTGATTAATTGAGACTCACTCAGAAGAGAAAGAAATAAAGTTTTCTAAAAACACAAAAGCAAGAAATTTGCCTTGTTGAAGTGCAATGCCAATGCTAAGATGCAAATAAGAAAAATAAGTACTCTGCAGACAAGTTGGCTTTCCAAATTCTGTGTCATTGGCTGGACTTAACTAAAATCTTTTGCCATTCATTTCAACTTGACGTCAATAAATCAACAAAACATTTTTTTTTTATTATACCTTTGTATGGTTTCTGTTGTCTCAGGATTTCCCTCCAAGGAGTGCTGCAGCCATGCAGAGATAAAATATTATTCTCTTCCTGCTTCAGTTTTGAAATTTCGGATGTGTTTCAGGAGCATAGTTGTGTTTTGTTCTGGCTCAGTCCTGGTGGCAGTAAACAATGTGTACACATTTGAAGCCTGAGCTGTTTCCTTTGTACTGTGTAATATGGTTGAAAGTGAGCGGTTGGGAGGGGGGTCATCCACTGCTTAAGCAAGAAATTACAAATGTGCATTGCCTCTATCACTTTCATCCTCTGGGCCCCTTCTTCATCTCTTATAGCCTTCCGTGTCATTCACAAACTTTGTGGCATTCTTCTTTAAGCAAATACCTTGTTTTATTTCTTTAGGCCCTGCTTGTGACCTTGTTATATTAATTTGTTAACAGAATCATACAGAGAAAATACTCTCCTTCACTAGCTAATTCAAGTCTAGATTTACTTTAAATATTACACAGGTAAATTTGCCTCTTTACTAATGGTACTTTCATTTAGCCTTCATGCCTTTTTTTTTTTTTTTTTCAATCTGTTAACATTTAATGCTATAACTGATCATCTTTTTACCTCTGAAAATAG
Seq C2 exon
GACAAGGATAAGTACCAGTTTGGTAAGACAAAAATATTTTTCCGGGCTGGTCAAGTAGCCTATCTTGAAAAAATAAGGGCAGATAAGTTGAGAGCTGCCTGTATCCGCATCCAAAAGACAATCCGAGGCTGGCTGATGAGAAAGAAGTACATGCGTATGAGGAGGGCTGCCATCACCATTCAGAGATATGTCAGAGGGCACCAAGCACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(2.1=19.7),PF0061222=IQ=WD(100=29.6),PF0061222=IQ=PU(85.0=23.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATACCAAGAGTTCTTCAGCC
R:
CATCGTGCTTGGTGCCCTC
Band lengths:
319-1436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]