GgaINT0029972 @ galGal3
Intron Retention
Gene
ENSGALG00000004624 | MYO5A_CHICK
Description
NA
Coordinates
chr10:10074258-10075292:+
Coord C1 exon
chr10:10074258-10074412
Coord A exon
chr10:10074413-10075202
Coord C2 exon
chr10:10075203-10075292
Length
790 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
GTGTTTATTTGTGCCTTCAGAAA
3' ss Score
9.48
Exon sequences
Seq C1 exon
AGCTGAAACCACGCGGGGTAGCAGTCAACCTGATTCCAGGACTACCAGCATATATTTTGTTCATGTGTGTACGCCACGCAGATTACCTTAACGATGACCAGAAAGTGCGTTCATTGTTGACCTCCACTATCAATGGCATCAAAAAAGTGCTGAAG
Seq A exon
GTCAGTCTGCTTGATTTAGGAGAATGTTAAATTGAAATTTCCCTCTGATTGTTCAATAAGCGAGGAAAGGTCTATCAGTTCTGGATTTCTGACCAGTAAATTCTCCCACTGAAGTTACAAAAGTTGGGCTAGCCAGCAACAAATTACAGTTGATAGCATTTTCTACACGTACTACCATAGATGCTCTGAATGAATTAAAAAAAGGATTATCTTATTTTTATTTTGAATAGTCTTCCTCCTCTGAAGCTAAACTTTTGAAGCTTTGGGTGCAGTAGGTTACATAGTGAGGCTTTGTAAATCTTCTCCAGAGCACTTAATTAAGATGTTTCATTTGCAGTGTTGGTTCACAGATTTCCATATTTGCTTCATCTGCCAATTTTTACTGGCGATAAGTTACTGCCTGAAGTCTTTGCAGTGAGTGGGCTGGAAGAGTGTAGGCCAGGGAGTATTGTGAAGGCAACATTAAGAGATAAAGATACTTCATGCCTTGTGGAGTGTTCTTATTTTTTAACTAAAGCAGCTTTTTCAATAAATGATCCTTCAGGAGCTTAGGTATTCATAGACATATTGGACATGTGTCAGTGAATGGAGTAAACGCTACAGAGGTCTCGAAATTACAGAGAGCACAAGGGTGTTTGAATGGTATTTTGTAAAAAAAAAATTACATTGTAATATGTTATTGAAATGCACAGTGTTATAAAACATCAGTGGATTTTAAGTGTATATCCAGCATTCATTGTTTTATTCCTCTTACTAGTCTTTGTTGAAATGTGTTTATTTGTGCCTTCAG
Seq C2 exon
AAAAGAGGTGATGACTTCGAAACGGTGTCTTTCTGGCTGTCCAACACCTGCCGGTTTTTGCACTGTTTGAAGCAGTACAGCGGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAACCACGCGGGGTAG
R:
CTTCTCCGCTGTACTGCTTCA
Band lengths:
241-1031
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]