BtaINT0098173 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006489 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58141106-58144380:+
Coord C1 exon
chr10:58141106-58141260
Coord A exon
chr10:58141261-58144290
Coord C2 exon
chr10:58144291-58144380
Length
3030 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
AGGCTTATTCTCTCTTTTAGAAA
3' ss Score
8.46
Exon sequences
Seq C1 exon
AACTGAAGCCACGTGGTGTAGCAGTCAATTTGATTCCAGGGTTACCAGCGTATATCCTGTTTATGTGTGTTCGACACGCTGACTACCTGAATGATGATCAGAAAGTAAGGTCGTTGCTAACATCAACAATTAATAGCATCAAAAAAGTATTAAAG
Seq A exon
GTTAGTTCATGTTCAACAAATTTCTCATAATGAATATTAATGATGACAGGTCTATACAGAGGTATTTTTCCATCCTTCAGTTCAGTTCAGTCGCTCAGTCGTGTCCGAATCTCTGCAACCCCATGAATTGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACTCAAACTCAAGTCCATCGAGTCGGTGATGCCATCCAGCCATTTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCTTTTCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCACATGAGGTGGCCAAAGTATTGGAGTTTTAGCTTTAGCATCATTCCTTCCAAAGAAAATCTAGGACTGATCTCCTTTAGGATGAACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGCGCTCAGCTTTCTTCACAGTCCAATTCTCATATCCATACATGACCACAGGAAAATCCATAGCCTTGACTAGATGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCCAGATTGGTCATAACTTTCCTTCCAAGGAATAAGCGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCAAAAAAATAAAGTCTGACACTGTTTCCACTGTTTCCCCATCTGTTTGCCATGAAGTGATGGGACCAGATGCCATGATCTTAGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTTTTTAGTTCCTGTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATGTGAGGTAATTGATATTTCTCCCAGCAATCTTGATTCCAGCTTGTGCTTCTTCCAGCCCAGCATTTCTCTTGATGTACTCTGCATATAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGGTGGACTCCTTTTCCTATTTGGAACCACTGTGTTGTTCCATGTCCAGTTCTAACTGTTGTTTCCTGACCTGCATTCAGGTTTCTCAAGAGGCAGGTCAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTTTCCACAGTTTATTGTGATCCACACAGTCAAAGGATTAGACATGATCTAAGTTGCCAGTTATGGCCACATTTTAGTCTTAACTGATACCTTCCATTATAGGAAATATTCATTATGTAATGTGTCTGTGTGCTTTCTTTGTAAACAGGGCTCAGATTGAACAATAATCAAAATTAACTCAATATACTTACATTTAGTTGTGAAGTAAACTAAGTTTCTTCATAGAAATAGTCTGCTTTAAGGTCTGTCTTAGAACTAAATTAAAAATACTTAGTGAAGTTCATATATATAGGGAATATGATGCTATAGTTAAAATAGGTGTTAAAAACATTTAGTAATACCTAGCCCATTCATATAAAAAGCTGTCTGATAAAATATTTAAAATTCTCTTCTGACTTTTCTTCCCATTATTCTCCAGCTCACCCCAGAATTTTCCTTGTTACCTGAAATGCCTGGTTTCATGTGAGCAGCAACACATAGATACTAATCAGAGAGGAAACACTTGGAAAAGACAGCGAAGTTACATAATAGAACAGAAAGCCCTACATAACTCAGTAATCACTGAGTCACGTTGCATAATCATCCTTTTGACAACCTAGAAAAACAGTGAACGTTATTCTTAGTTTTAACCATTTTTCAGTGCACAGTTCTGTGGCATTAAGTGCGTTCATATTGTTGTATAACTGTCACCATCATCATCTCCAGAACTTTTTCATCTTCCCCAGCTGAAACTCTGCACCCATTAAACACTCTCCCCAGCCCCTGGTCATAACTTTTGATGCCAGTTCTCAGTCCCCACTGCACAGATACTCTATGCAGTTACATTCTGCAGTGCTTACTAAAGTGTGGAGTTTCTAAATATTTTAACATTCAAAAATTGATGAATGTCTTCTGAATGGAGCTCATGTAATTTTTGGTATATTGATGGTATATTGCATTTATTAAACTATGAATTTTACTACTTCTGAAGTTAATGCCTATGAAGACAGCAAAACCAAATCATGAAGTTTTCTCCCTCTCATCTTAATTATAAGAAGAAATTTATCTAATTTGACTAATTATTGTACCAGATTGTTTAAAGATTTAAAATGAGTAGCTACTTGGGACTTCCCTGGTGGTTAAGACTTCCACTTTCCAATGGTTAAGAGTTCGTCTTCCAATGCAGAGGGTGTGGGTGATCCCTGGTCAGGGACCAAAGATCCCACATGCCTTGTAGTAGAAAAACCAAAACATAAAATAGAAACAATATTGTAATGAATTCAATAAAGACTTCAGAAAAAAGTAAAATAATTTAAAAAATGTAAAAAGCGTAGATTCTTGATCATAGCACTCTTTTAGAACATCCTTTTTTTAAACTGAAGTACATTTGTCTCGTGTCCTGTTTTGATTTAGAGATGTTGTTTGACATGTGGCCCAGTACTGATGAAAAGTCAGTCTGTCCAGTGCTCTGCACAGGACTCCCTCCATCCCATGTCTGATTCGCTCCTCAGAAATTGTATCTTATTCACTGACAAGATTTTTAACCTAATCTGGGTTTTAGTGCTTCACAATGTTTGTGATTCTCTTTTGTACCTTTAGTCCTTTCTTATTCCCTTCAGTAACCCTCAGGGAAGTAAGTTTGGGTAAGCTAGACTTGGTGAATTGTTTTCTACCTAAAGGGACTACTAAGCTAATATCAATGTAATGAATGGGCATCCCTTTCTAATGGCAAGAAAACAGATCCAAGCAAGGTAACAGCTAATGAATTCAGTGGTTGAATTCTACAGCAGGTGCAACATGAGGCTTTACAACTGTAAAGTGATTGATTTTTTAATTGTTGTTAATGGTAAGTGAAGGAAACAGGTCTTCTGGTATCTAATCAGTTTTTTCAGGCTTTTATTCCCATAAGGAAAAAACTAATTTAGGCTTATTCTCTCTTTTAG
Seq C2 exon
AAAAGAGGTGATGATTTTGAAACCGTCTCCTTTTGGCTTTCTAACACATGCCGATTTTTGCACTGTTTAAAGCAGTACAGTGGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489:ENSBTAT00000008516:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development