GgaINT1018720 @ galGal4
Intron Retention
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8324796-8325830:+
Coord C1 exon
chr10:8324796-8324950
Coord A exon
chr10:8324951-8325740
Coord C2 exon
chr10:8325741-8325830
Length
790 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
GTGTTTATTTGTGCCTTCAGAAA
3' ss Score
9.48
Exon sequences
Seq C1 exon
AGCTGAAACCACGCGGGGTAGCAGTCAACCTGATTCCAGGACTACCAGCATATATTTTGTTCATGTGTGTACGCCACGCAGATTACCTTAACGATGACCAGAAAGTGCGTTCATTGTTGACCTCCACTATCAATGGCATCAAAAAAGTGCTGAAG
Seq A exon
GTCAGTCTGCTTGATTTAGGAGAATGTTAAATTGAAATTTCCCTCTGATTGTTCAATAAGCGAGGAAAGGTCTATCAGTTCTGGATTTCTGACCAGTAAATTCTCCCACTGAAGTTACAAAAGTTGGGCTAGCCAGCAACAAATTACAGTTGATAGCATTTTCTACACGTACTACCATAGATGCTCTGAATGAATTAAAAAAAGGATTATCTTATTTTTATTTTGAATAGTCTTCCTCCTCTGAAGCTAAACTTTTGAAGCTTTGGGTGCAGTAGGTTACATAGTGAGGCTTTGTAAATCTTCTCCAGAGCACTTAATTAAGATGTTTCATTTGCAGTGTTGGTTCACAGATTTCCATATTTGCTTCATCTGCCAATTTTTACTGGCGATAAGTTACTGCCTGAAGTCTTTGCAGTGAGTGGGCTGGAAGAGTGTAGGCCAGGGAGTATTGTGAAGGCAACATTAAGAGATAAAGATACTTCATGCCTTGTGGAGTGTTCTTATTTTTTAACTAAAGCAGCTTTTTCAATAAATGATCCTTCAGGAGCTTAGGTATTCATAGACATATTGGACATGTGTCAGTGAATGGAGTAAACGCTACAGAGGTCTCGAAATTACAGAGAGCACAAGGGTGTTTGAATGGTATTTTGTAAAAAAAAAATTACATTGTAATATGTTATTGAAATGCACAGTGTTATAAAACATCAGTGGATTTTAAGTGTATATCCAGCATTCATTGTTTTATTCCTCTTACTAGTCTTTGTTGAAATGTGTTTATTTGTGCCTTCAG
Seq C2 exon
AAAAGAGGTGATGACTTCGAAACGGTGTCTTTCTGGCTGTCCAACACCTGCCGGTTTTTGCACTGTTTGAAGCAGTACAGCGGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAACCACGCGGGGTAG
R:
CTTCTCCGCTGTACTGCTTCA
Band lengths:
241-1031
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]