GgaINT0029975 @ galGal3
Intron Retention
Gene
ENSGALG00000004624 | MYO5A_CHICK
Description
NA
Coordinates
chr10:10076963-10077931:+
Coord C1 exon
chr10:10076963-10077245
Coord A exon
chr10:10077246-10077756
Coord C2 exon
chr10:10077757-10077931
Length
511 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
GGTATTCTTAACTCATACAGGTA
3' ss Score
4.55
Exon sequences
Seq C1 exon
TTTCTGGAATGCTGGAGCACGAGACTATCCAGGGTGTCTCAGGGGTGAAACCAACAGGGCTGCGGAAGAGAACGTCCAGCATTGCTGATGAAGGAACCTACACTTTGGACTCCATTATTCGACAGCTGAACTCTTTCCATTCCGTGATGTGTCAGCATGGAATGGATCCAGAGCTGATCAAACAGGTTGTCAAGCAGATGTTCTACATCATTGGGGCTGTAACACTTAATAATCTTCTCCTGCGCAAGGACATGTGTTCATGGAGCAAAGGAATGCAGATAAG
Seq A exon
GTGGGAGAGCTTTTGTCATACTTTTCTTGAATGTGCTGCTGAAAATGTTAGTGAGCTCCTGGCTGTAATTTGCTACTTCCTGTGCTAAAGCCACCTTAGGCTGTTTCTGCATTTGCCTGCAGTTGTCCACTGCATTCGACTGGCATGTGCCAGGAAACGTAGCCAAGGCATTCCCTCCCTTGGGTAATATTGTGAAGTGTCACTGTGCATTTGTATGAACAGAATCTCATTTGCCTTTCCTCTTACGCTTGCCTCATTTCCACAGTTAATAGGAACAGAAACAAAGGGGGAAAGGTAGTTAGTGGAAGTCTTCAGCCATAGTTTATGACTGTTTTGAAACTCAAAATGTCCTGCCTTAATTGAAGGGAAATAGAATGAGGATAAAATTACAGAAAAGTACAAGTGTGAAGGGAAAGTATATAAGGAGAAAGAAACACTGAAAGGGAAACAGATATGCTTTTGATTTAGCAGTAATTAAGCACTAATGTTTTGGTATTCTTAACTCATACAG
Seq C2 exon
GTACAATGTGAGTCAACTTGAAGAATGGCTACGTGATAAAAATCTAATGAACAGTGGGGCCAAAGAAACACTGGAGCCCCTCATACAGGCTGCACAGTTGTTGCAAGTGAAAAAGAAAACAGATGAAGATGCAGAAGCCATTTGTTCAATGTGCAATGCACTGACTACTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=PU(31.1=34.7)
A:
NA
C2:
PF0184314=DIL=FE(54.7=100),PF0146614=Skp1=PU(70.3=88.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCACGAGACTATCCAGG
R:
AGTGTTTCTTTGGCCCCACTG
Band lengths:
343-854
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]