BtaINT0098176 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006489 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58147278-58148992:+
Coord C1 exon
chr10:58147278-58147560
Coord A exon
chr10:58147561-58148817
Coord C2 exon
chr10:58148818-58148992
Length
1257 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCAACCCTTTTTTGACATAGGTA
3' ss Score
7.99
Exon sequences
Seq C1 exon
TCTCCGGAATGCTGGAGCATGAAACCATTCAGGGTGTCTCTGGGGTGAAGCCCACAGGGCTAAGAAAGCGAACCTCCAGCATCGCTGACGAGGGTACCTACACACTGGACTCCATCCTGCGACAGCTCAACTCCTTCCACTCGGTCATGTGTCAGCACGGCATGGACCCCGAATTGATCAAGCAGGTGGTCAAGCAGATGTTCTACATTGTGGGGGCCGTCACCCTGAACAACCTCCTTTTGCGGAAGGACATGTGCTCCTGGAGTAAAGGCATGCAGATCAG
Seq A exon
GTGAGCGAACTCCAACGCCTGTCAGGGCCTTCTCGGGCTGCCTAACTGTGTGCTGGGGCACACGTGAGGCCCGGGCACCTGGCGTCTGAAGCCCCCAGGTGGGCAGTAAGGGCAGACCGGGCATGGAGCTGTTCCTCCTGCCTGACTGACCTTCCTCCACTGTCATTCGTGGTTGCTCCCAGCAGGCCTTCAGCCACTGCTTGTTGGAACCCGGCTGCATGTAAAGTTAACTCATATGAGGGAGTAAATCTTTTACTGATGTTTGAAGTATGCCCCTCTCAGTTTTAAGAAACGCTGCACTCAGTTTTGTCCAATTGCTCCTCAGCATTACCTTATTAACATAACAGAATTTTTTTTTTGGCAAATAATTTATTTTAAAACAGCTGGAAAATTCACCAAGAGAGGGGGAAAGTATTTCTCCTATAAAAGTCTATAGTTACTCAATCTTAGAAAATTTGACCTTCTTTCCAAATTTTCCATTCTGACTCATATCCACTGTAGACAGCAGTCAGAAGGTAATGCCTTCCACTCAAGTCATTGAATTTATTTCTCTGCACGCTCTGTTTATACCCACGAAGCCCCTCTTGGCCTGATTACTAAGTCCTGACTGTGGCTGCGTTTATCTGACTCCTATTTTGCAAACCACTGTCACCTGATTGGCCACCTCTTAAAACCTCAGCATCTGTGTAGTTTCTGTGTCTCTCCTCATATTTTCTGTCTGCCTCTTCCTATGCCCCCACTGGCCCTTCTTCCCTACATCCCTAAACTTCCTCAGGCCACTACCTCATCATCCAGGCTCTTCCCTGAAAAGGGTCAGAGCACAGGCTCTAGGTGGGGATCTTACTGTATCCACTAGCTTGGAGTTTGACGTAAGGAACAGAGAGCAATTAGAGGATTATTAGTTCTCTCCTCTCAAGTTGTAAAAAGCTGGAAGGTGTTTTCTGCTCTGCTGTTTAATAAGGACACAGCCATACTATGTGTTCTATTTTTTTTTTAAGCACACTTTATTTTATAACTTGCTATTATGGCTACATTTCTGTTTTCCATTAAAGAGAATTATAGTCTCTAGAATAATACTCACTCATATAATTATGATTATAAACCTGATTATTTATAGTGATAAATTTTTAAGCACAGCTAATGGTTTAAAAAACAGAATTCAACTGAAATTCCTAACAAAGCCATACACAGAAAAATTAACACATTTATGATAACATTCGGTAAATTTGCATCCCCCTCAACCCTTTTTTGACATAG
Seq C2 exon
GTACAATGTCAGTCAACTAGAAGAATGGCTGCGTGACAAGAATTTGATGAACAGTGGGGCTAAGGAAACCCTGGAGCCTCTCATTCAGGCTGCTCAGCTTTTGCAAGTGAAAAAGAAAACAGATGATGACGCGGAAGCCATTTGTTCCATGTGCAATGCTTTAACTACTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489:ENSBTAT00000008516:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=PU(31.1=34.7)
A:
NA
C2:
PF0184314=DIL=FE(54.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAGGGTGTCTCTGGGGTG
R:
TGAATGAGAGGCTCCAGGGTT
Band lengths:
344-1601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development