GgaINT1018724 @ galGal4
Intron Retention
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8327501-8328469:+
Coord C1 exon
chr10:8327501-8327783
Coord A exon
chr10:8327784-8328294
Coord C2 exon
chr10:8328295-8328469
Length
511 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
GGTATTCTTAACTCATACAGGTA
3' ss Score
4.55
Exon sequences
Seq C1 exon
TTTCTGGAATGCTGGAGCACGAGACTATCCAGGGTGTCTCAGGGGTGAAACCAACAGGGCTGCGGAAGAGAACATCCAGCATTGCTGATGAAGGAACCTACACTTTGGACTCCATTATTCGACAGCTGAACTCTTTCCATTCCGTGATGTGTCAGCATGGAATGGATCCAGAGCTGATCAAACAGGTTGTCAAGCAGATGTTCTACATCATTGGGGCTGTAACACTTAATAATCTTCTCCTGCGCAAGGACATGTGTTCATGGAGCAAAGGAATGCAGATAAG
Seq A exon
GTGGGAGAGCTTTTGTCATACTTTTCTTGAACGTGCTGCTGAAAATGTTAGTGAGCTCCTGGCTGTAATTTGCTACTTCCTGCGCTAAAGCCACCTTAGGCTGTTTCTGCATTTGCCTGCAGTTGTCCACTGCATTCTACTGGCATGTGCCAGGAAACGTAGCCAAGGCATTCTCTCCCTTGGGTAATATTGTGAAGTTTCACTGTGCATTTGTATGAACAGAATCTCATTTGCCTTTCCTCTTACGCTTGCCTCATTTCCACAATTAATAGGAACAGAAACAAAGGGGGAAAGGTAGTTAGTGGAAGTCTTCAGCCATAGTTTATGACTGTTTTGAAACTCAAAATGTCCTGCCTTAATTGAAGGGAAATAGAATGAGGATAAAATTACAGAAAAGTTCAAGTGTGAAGGGAAAGTATATAAGGAGAAAGAAACACTGAAAGGGAAACAGACATGCTTTTGATTTAGCAGCAATTAAGCACTAATGTTTTGGTATTCTTAACTCATACAG
Seq C2 exon
GTACAATGTGAGTCAACTTGAAGAATGGCTACGTGATAAAAATCTAATGAACAGTGGGGCCAAAGAAACACTGGAGCCCCTCATACAGGCTGCACAGTTGTTGCAAGTGAAAAAGAAAACAGATGAAGATGCAGAAGCCATTTGTTCAATGTGCAATGCACTGACTACTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=PU(31.1=34.7)
A:
NA
C2:
PF0184314=DIL=FE(54.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCACGAGACTATCCAGG
R:
AGTGTTTCTTTGGCCCCACTG
Band lengths:
343-854
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]