RnoINT0097244 @ rn6
Intron Retention
Gene
ENSRNOG00000058866 | Myo5a
Description
myosin VA [Source:RGD Symbol;Acc:3143]
Coordinates
chr8:82151170-82153652:+
Coord C1 exon
chr8:82151170-82151450
Coord A exon
chr8:82151451-82153475
Coord C2 exon
chr8:82153476-82153652
Length
2025 bp
Sequences
Splice sites
5' ss Seq
ATACGGTGA
5' ss Score
-21.35
3' ss Seq
TCTCTTTTTATTTTTGGCATAGG
3' ss Score
-1.39
Exon sequences
Seq C1 exon
TCTCAGGCATGCTAGAGCATGAAACAATTCAGGGAGTATCTGGGGTGAAGCCCACAGGACTCAGAAAGCGAACCTCCAGTATCGCCGATGAGGGCACCTACACACTGGACTCCATCCTGCGGCAGCTCAACTCCTTCCATTCCGTCATGTGTCAGCATGGCATGGACCCAGAGCTAATCAAGCAGGTGGTCAAGCAGATGTTCTACATCGTGGGCGCCATCACCCTGAACAACCTCCTGCTGCGCAAGGACATGTGCTCCTGGAGCAAAGGCATGCAGATA
Seq A exon
CGGTGAGCAGACACCGGCGTGTGACACACAGCCTCCTGTGACACACAGCCTCCTGTGACAGGCCTGCCTGCCGGTCGATGGATGATGGCTCGGCTCTGAGCAGTATCATGTGGCCAGCAGCAAGGGAAGGACTGGTATAGACGAGCCAGCTCCTGGGCCTGGATGTGTTCTCAGTGCTCAGGAGGAAGGCCTGCTCTTCTGTTAAGCTACCTTGTTCATAGGAGTATAGAGATGTGCAAGATTCACTACAGTGTATATTTTTTCTCTCCTTTCTTATTTGTTTTGATTGCATAATAGGAAAATATTAGGAAAAACAAAACCTTGTAATATTTTGTTGTTGCTCTTAGAAATATCTTTCCATATTAAGAATATAAAGAAGATAAACCCACTTATAAATAAGATCTGGAGAAGTAGCTCAGTGGTTAAGAGCACTTAGTGCTCTTGAACAGGACCCAGGTCAGGTGAGCCTACAGGGTTGTTCACAACTCTCTAATTCCAGTTCCAGCTGGCCTGTGCGCATACTGCATGTGCATGGTATGTGTACACATGCCCAGCCAAACACTTTTTTTTCCTTTTTAAAATTTTAAGTTAAAGAAAAATAATAGGTCCAAAGAGATCATTTACTAACACTTGAATTTGAAGACGAATTATACTCCATTTTCCACTTATTTTAGTTTCTTGTTTGTTTTAGAGAAATGGGTCTTGAACCCACAATCCTTCTGCTTCAGCTAAGAGTACAGGCATACAGCAGACATCCCCAGTAGCAACTATATTACATACCCACTTCCCTCACCATTGCATCATTATTGTAACAACTGAATTTGGAGAGCAAATGATTATTCTGAAGCATCTGTTATGTTCACTGGAAGAAAACAAAAGGATTTTCACCGGGTGGTAGTGGTGCATACCCTTAATCTCAGCACTCAGGAGGCAGAGGCAGGTGGATCTCTGGGAGTTTGAGGCTAACCTGGTCTCTGGAACAAGTTTCAGGAGAACCAGGACCACATAGAGAAACCCTGACTCAAAAAAACTAAAAGAAAAGGGGCGGGAGGGTGTTTCCTACAAAATCTATAGTTACTATTAGCAAACTGTAGTGTTCTATGTTTACCATTCTCACTCGTATCTCACTGTGAGGTACAACCTCCATTCAGAGATTCTAACTTTTTGTGACGTTTCTGACCTATTGTTTAAGACAGGGTCTCATGTACCCGGGCTGGTCTCAGACTCACAGTGTAGCCAAAGATAACTTGGAACTCCTGATCTTCCTGCCTCTACCTCCCAAGTGTGAGCCACTACACCCAGCTGCAGTCACTCGCCTTCTTATCACAGTGCCTCCCTCCGTCTGCCTGAAGACTGAATTCTGACCGTGTGTCTGTCTGTCTGCTTTAACTGTAGTTGAAACCTCCCATCAGTTAGCTGGGCGCCTCTTCAAAGTCTAGCATCCGTAGAGCCTTTGTCTCTTCCAAGGGTGTTCCCTTGCTCTTCTCTTCTATCTCTAGACTTTCTCAGGCCACTGTCCCCATTGTCAGGGCCCTTCCCTAGGGAAGTTTGAGTACAGGGCACATGTTGGGGCGTCTGGCTGTTCACTCAACCATTTTGAGTCTTCTTAAGGAAGACAGAGTGCGTGAAGAATCAGAAGGTTTATCATGCAAAGGGAGCCTGAATTTCAGAAGCCAGAAGTACATTCTAGGCAGCTGTTAACAAGGACAGAGTCACATGATATAGTCAGTTTCGTTTATTAGCAAGTCTAATAACTTTCCCTCCAGGGACTTTGTTTCCATCTTTCAATAAAGAGTTACAGTCTCTTGTCATTCAGTCTTACATAACTACGATTATAAGCCTCATGACTTCATGATAAATGTTAAAGCACAGCTGATTAGATTTTAGAAAATTGAATAAAAATACTACCTGTCATATTAACTGACACGGCTACATACACAAAATTAAGACATTTATGACAGCATTCAGCAAATTTGCATTTTCTCTCTTATTCTCTCTTACATTTTCTCTTTTTATTTTTGGCAT
Seq C2 exon
AGGTACAATGTCAGTCAATTGGAAGAATGGCTACGTGACAAGAATCTAATGAACAGTGGGGCAAAAGAGACTCTGGAACCTCTTATCCAGGCTGCTCAGCTTTTGCAAGTGAAAAAGAAAACTGACGATGACGCGGAAGCCATCTGCTCCATGTGCAACGCTCTGACCACAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058866:ENSRNOT00000079535:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=PU(30.2=34.0)
A:
NA
C2:
PF0184314=DIL=FE(54.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]