DreINT0100847 @ danRer10
Intron Retention
Gene
ENSDARG00000061635 | myo5aa
Description
myosin VAa [Source:ZFIN;Acc:ZDB-GENE-041027-2]
Coordinates
chr18:39058822-39060056:+
Coord C1 exon
chr18:39058822-39059104
Coord A exon
chr18:39059105-39059881
Coord C2 exon
chr18:39059882-39060056
Length
777 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
TTTATTATGTGTTTGTTCAGGTA
3' ss Score
9.09
Exon sequences
Seq C1 exon
TCTCTGGCATGCTGGAACATGAAACCATCCAGGGTGTGTCAGGAGTGAAGCCCACAGGTCTCCGCAAGAGGACGTCAAGTATTGCTGATGAGGGCACGTACACACTGGACTCCATCATCCGTCAGCTCAACACCTTCCACTCCATCATGTGTCACCACGGCACTGACCCCGAGCTCATCAAACAGGTGGTCAAGCAGCAGTTCTACATCATCGGCGCTGTCACCCTCAACAACCTGCTGCTGCGCAAAGACATGTGCTCCTGGAGCAAGGGCATGCAGATCAG
Seq A exon
GTTAGTGCACTGTAAACACTGTATATGCAGACCAGATGAAAAAAATATATATAAATATATATTGGTCTTTATGACTGACTTAAAGCAATGGCCTCAAACTAAATTCTTGCAGGGCCGCAGCTCTGCATAGTTTAGCTCCAGCCACCTCCAACTCACACCTGCTTAATAGTCTCTAGTAGTCTTGAACATCTTGATTAGTTGGATCAGCTGTGTTTGCTTAGGGTTGGAGCAAAAATGTGCAGATCTGCGGCCCTCCAGGAATCCAGTTTGAGACCTATGGCTTAAAGGAAATTCATATATTTTTACATCAGTATGTTCTGTTGTTTTATATGTTTATACTACTAGTATCCTTTTTTCATATGGCATGATACTGGTCTTCTAAAGGTCTCTGGTCCCAAATCAAAACTCAGAAATGGAAATTAATCCCTGATAGGTGAATGGTATAGCTAGATAGACTTATAGACAGACAAACAAACAGACAGACGGACGGATGGATGGATCATGGAATTTGCTATTTAAATATGTAGTAAAATAATCTAATTGAAATTTAAGCTTGTAGATATATATTGTAGATATTGTAGTGTTTTATGGGGCTTTATCCTGCTTGAAGTAGCCATCAGACGATGGGTACATCGTAATAAGCTAAAAAATATATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTTTATTATATTTTATTATGTGTTTGTTCAG
Seq C2 exon
GTATAACGTGAGTCAGCTGGAGGAATGGCTGAGGGATAAGAACCTCATGACATGCGGCGCTAAAGAAACACTGGAGCCGTTGATTCAGGCTGCGCAACTACTGCAGGTGAAGAAGAAAACTGATGAGGACGCCGAGGCCATCTGCTCTATGTGTAACGCCCTCTCCACAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061635:ENSDART00000133618:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=PU(31.1=34.7)
A:
NA
C2:
PF0184314=DIL=FE(54.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGGGCACGTACACACTG
R:
CACATAGAGCAGATGGCCTCG
Band lengths:
350-1127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]